Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0077
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    79   7e-16
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    27   2.9  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    27   2.9  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    26   3.8  
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    26   3.8  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   5.1  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   5.1  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    25   6.7  
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    25   6.7  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   6.7  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    25   8.9  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   8.9  

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 78.6 bits (185), Expect = 7e-16
 Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 3/164 (1%)
 Frame = +2

Query: 104 LEKIVEPTGYKLDLEPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISF---WDVQA 274
           L K V+P  Y L L P L+   Y G V + L  L++S+ ++LH  +   ++    W  Q 
Sbjct: 20  LPKNVKPIHYDLSLYPDLETFTYGGKVVVTLDVLEDSNSITLHGINLRILTAALEWGSQT 79

Query: 275 YPASDAEHPVERVVVKELRMDVKKPILTLYFEKPIPKGTEGHIELTYRGNIHMGVTEGFF 454
             AS+  +  ER+V              L F   +P  +   + L +   I  G+ EGF+
Sbjct: 80  VWASEVSYGDERIV--------------LQFPSTVPANSVAVLTLPFTARISSGM-EGFY 124

Query: 455 KSTYTTDQGEEIMVAATQLRPNNARRMFPCFDEPGYKTPFEISV 586
           +S+Y    G    +A TQ+ P +ARR FPC+DEP  K  F I +
Sbjct: 125 RSSYVDSDGNTKYLATTQMEPTSARRAFPCWDEPALKATFTIDI 168


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 18  HRKRYRLVTLSKHEASTSITHMGSLWKPVWRRSWSRLDISW 140
           H++ Y + +L KH A  S   +    K V   SW ++   W
Sbjct: 219 HQEGYPVTSLKKHTAPVSCLALHGSEKKVLSGSWDKMVYYW 259


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 517 WTKLCGCYHNLFTLICRVRRFEESLGD 437
           W+ +CGCY N +T  C     E+ + D
Sbjct: 229 WSTVCGCYKNTYT--CSQTCLEDEVQD 253


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +2

Query: 200 WLQESDELSLHCDHELGISFWDVQAYPAS--DAEHPVERVVVKE 325
           ++ +S E      +  GI FWD   YP     +E P+  V +K+
Sbjct: 463 YISKSYEFCSSVKNNFGIDFWDQVEYPQPYVASEWPIRYVSIKD 506


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 446 GFFKSTYTTDQGEEIMVAATQLR-PNNARRMFPCFDEPGYKTPFEISV 586
           G F   YTT   +E +V   Q+R  NN  R     ++   + P +IS+
Sbjct: 474 GLFTGEYTTGASKEYLVHLEQMRIANNRARKHSFAEDEEREAPEDISL 521


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 331 YGRQKADIDFVFRKADPQGNRRSYRVDVSRQYS 429
           Y  +KA+   V   A    N RSY   VSR YS
Sbjct: 20  YKNEKAEPTQVLDAAKANKNTRSYPYSVSRNYS 52


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/60 (23%), Positives = 25/60 (41%)
 Frame = +2

Query: 398 HIELTYRGNIHMGVTEGFFKSTYTTDQGEEIMVAATQLRPNNARRMFPCFDEPGYKTPFE 577
           H + T   N    +  G+        + E+I+ +    +P ++    PC  +P   TPFE
Sbjct: 98  HYDFTTLLNFQRYLDLGYGIEDVKIKENEDIVKSKVGKKPTSSDFYIPCLIKPKIITPFE 157


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 344 KPILTLYFEKPIPKGTEGHIELTYRGNIH 430
           K I  L    PIP+G +   EL+Y+ N H
Sbjct: 77  KHISKLPIASPIPRGLDRSGELSYKDNNH 105


>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 83  GLAMETRLEKIVEPTGYKLDLEPFLDDGVYRG 178
           G+A  T L KIV+  G KLD+    D GV  G
Sbjct: 309 GVASLTMLPKIVDAVGDKLDV--LFDSGVRSG 338


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 389 TEGHIELTYRGNIHMGVTEGFFKSTYTTDQGEEIMVAATQLRPNNARRMFP 541
           T   +  T   +IH  +T GF+ +T+TT        + T +  +N+  +FP
Sbjct: 154 TTSFVPTTTESSIHP-ITTGFYNTTFTTGY---FNTSVTSVAVHNSTTVFP 200


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 164 RRRGTALSPAYIQSAPRSSPNGFP*RAHMRY 72
           RR  T+   AY+ +   +SP G P R  +RY
Sbjct: 59  RRSPTSPQSAYVPATVYTSPIGSPRRGSVRY 89


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 554 PGYKTPFEISVARP 595
           PGYK P+E+ V +P
Sbjct: 348 PGYKQPWELDVGKP 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,821
Number of Sequences: 5004
Number of extensions: 58864
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)