Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0077
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660... 77 9e-15
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910... 61 8e-10
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 59 3e-09
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 56 2e-08
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 31 0.74
08_02_0385 + 16574553-16574885 29 2.3
09_04_0414 - 17393780-17394826 29 3.0
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 29 4.0
03_04_0083 - 17146422-17148068 28 5.2
08_02_0957 + 23033602-23034749,23035519-23035765,23036598-230367... 28 6.9
05_04_0189 - 18911654-18913207,18913310-18913528,18914034-189143... 28 6.9
01_05_0260 + 20121679-20122101,20122188-20122853 27 9.2
>02_02_0080 +
6598427-6598663,6599246-6599391,6599567-6599669,
6600407-6600593,6600699-6600792,6601290-6601443,
6601751-6601855,6601937-6602053,6602248-6602361,
6602891-6603073,6603207-6603486,6603565-6603686,
6603763-6603860,6603941-6604118,6604439-6604553,
6604656-6604723,6604825-6604902,6604986-6605060,
6605156-6605338
Length = 878
Score = 77.4 bits (182), Expect = 9e-15
Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 2/171 (1%)
Frame = +2
Query: 95 ETRLEKIVEPTGYKLDLEPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWDVQA 274
+ RL P Y L L P LD + G+V + + + L L+ EL +S VQ
Sbjct: 14 QARLPGFAAPRRYDLRLVPDLDGCAFTGSVDVSVDVTAPTRFLVLNAA-ELEVSPGGVQF 72
Query: 275 YP--ASDAEHPVERVVVKELRMDVKKPILTLYFEKPIPKGTEGHIELTYRGNIHMGVTEG 448
P A HP E V E IL + F + +P G EG + + ++G ++ + G
Sbjct: 73 KPHGAEQELHPAEVTNVPE------DEILIIRFNEVLPVG-EGTLVIAFKGTLNDKM-HG 124
Query: 449 FFKSTYTTDQGEEIMVAATQLRPNNARRMFPCFDEPGYKTPFEISVARPRE 601
F++S Y + GE+ +A TQ P +ARR FPC+DEP +K F+I++ P E
Sbjct: 125 FYRSVYELN-GEKKNMAVTQFEPADARRCFPCWDEPSFKAIFKITLEVPSE 174
>09_03_0038 +
11790075-11790302,11790397-11790542,11790915-11791017,
11791148-11791334,11791466-11791559,11791702-11791855,
11792189-11792305,11792695-11792808,11793629-11793811,
11794209-11794494,11794592-11794713,11794746-11794802,
11794803-11794900,11795036-11795213,11795355-11795455,
11795530-11795629,11795751-11795828,11796785-11796862,
11796956-11797138
Length = 868
Score = 60.9 bits (141), Expect = 8e-10
Identities = 46/169 (27%), Positives = 81/169 (47%)
Frame = +2
Query: 95 ETRLEKIVEPTGYKLDLEPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWDVQA 274
+ RL + P Y+L L P LD V+ G + + + L L+ +L + ++
Sbjct: 17 QARLPRFAAPRRYELRLRPDLDACVFTGDASVVVDVSAPTRFLVLNAA-DLAVDRASIR- 74
Query: 275 YPASDAEHPVERVVVKELRMDVKKPILTLYFEKPIPKGTEGHIELTYRGNIHMGVTEGFF 454
+ + E+ + IL L F+ +P G EG + + + G ++ + GF+
Sbjct: 75 ---------FQGLAPTEVSLFEDDEILVLEFDGELPLG-EGVLAMDFNGTLNDQM-RGFY 123
Query: 455 KSTYTTDQGEEIMVAATQLRPNNARRMFPCFDEPGYKTPFEISVARPRE 601
+S Y +GE +A TQ +ARR FPC+DEP +K F++++ P E
Sbjct: 124 RSKYEY-KGETKNMAVTQFEAVDARRCFPCWDEPAFKAKFKLTLEVPSE 171
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 58.8 bits (136), Expect = 3e-09
Identities = 49/169 (28%), Positives = 81/169 (47%)
Frame = +2
Query: 95 ETRLEKIVEPTGYKLDLEPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWDVQA 274
+ RL + P Y+L L P L V+ G + + + L L+ +L + ++
Sbjct: 11 QARLPRFAAPRRYELRLRPDLAACVFSGEASVAVDVSAPTRFLVLNAA-DLAVDRASIRF 69
Query: 275 YPASDAEHPVERVVVKELRMDVKKPILTLYFEKPIPKGTEGHIELTYRGNIHMGVTEGFF 454
+ AE V V E + IL L F +P G EG + + + G ++ + GF+
Sbjct: 70 QGLAPAE-----VSVFE-----EDEILVLEFAGELPLG-EGVLAMRFNGTLNDQM-RGFY 117
Query: 455 KSTYTTDQGEEIMVAATQLRPNNARRMFPCFDEPGYKTPFEISVARPRE 601
+S Y +GE +A TQ +ARR FPC+DEP +K F++++ P E
Sbjct: 118 RSKYEY-KGETKNMAVTQFESVDARRCFPCWDEPSFKAKFKLTLEVPSE 165
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 56.0 bits (129), Expect = 2e-08
Identities = 29/84 (34%), Positives = 51/84 (60%)
Frame = +2
Query: 350 ILTLYFEKPIPKGTEGHIELTYRGNIHMGVTEGFFKSTYTTDQGEEIMVAATQLRPNNAR 529
I+ + F + +P G EG +++ + G ++ + GF++S Y +GE +A TQ +AR
Sbjct: 81 IVVIGFGQDLPIG-EGVLKMDFTGTLNDQM-RGFYRSKYEY-KGESRNMAVTQFEAADAR 137
Query: 530 RMFPCFDEPGYKTPFEISVARPRE 601
R FPC+DEP +K F++++ P E
Sbjct: 138 RCFPCWDEPAFKAKFKLTLEVPSE 161
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 31.1 bits (67), Expect = 0.74
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 26 EVSASHIIKARSIDLNNAYGLAMETRLEKIVEPTGYKLDLEPFLDDGVYR 175
E+S IIK +D N + TR+ ++ E G ++EP DD R
Sbjct: 276 EISTWDIIKCAIVDSNCGSRVIATTRISQVAEEVGDIYNMEPLSDDNSKR 325
>08_02_0385 + 16574553-16574885
Length = 110
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 182 VKIQLKWLQESDELSLHCDHE 244
+KI ++W++E +L L CDH+
Sbjct: 47 MKIMMRWMREKQKLRLICDHD 67
>09_04_0414 - 17393780-17394826
Length = 348
Score = 29.1 bits (62), Expect = 3.0
Identities = 25/78 (32%), Positives = 37/78 (47%)
Frame = +2
Query: 134 KLDLEPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWDVQAYPASDAEHPVERV 313
K D PFL + Y+ ++K L +D ++ D G+S DV PA+D R+
Sbjct: 40 KFDFSPFLIE--YKSG---RVKRLMGTDVVAASADVLTGVSSRDVAIDPANDVR---ARL 91
Query: 314 VVKELRMDVKKPILTLYF 367
+ R K P+L LYF
Sbjct: 92 YLPSFRATAKVPVL-LYF 108
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = -2
Query: 379 DRLFEIQSQY--RLFDV-HTKLLHNDTFYWMFR 290
DRLF+ Q Q+ +L+D+ H ++H FY +FR
Sbjct: 765 DRLFKEQMQHIIQLWDLCHVSIIHRTQFYLLFR 797
>03_04_0083 - 17146422-17148068
Length = 548
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 541 GEHTPRVVWTKLCGCYHNLFTLICRVRRFEESLGDTH 431
G+H P + W L G TL+ RV F S+ D H
Sbjct: 237 GDHLPLLKWLDLQGVRRRCRTLVQRVDVFVRSIIDEH 273
>08_02_0957 +
23033602-23034749,23035519-23035765,23036598-23036744,
23036849-23037076
Length = 589
Score = 27.9 bits (59), Expect = 6.9
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Frame = +2
Query: 29 VSASHIIKARSIDLNNAYGLAME--TRLEKI-VEPTGYKLDLEPFLDDGVYRGTVKIQLK 199
V AS ++ ++DL + +RLE + E D+E F + V TVKIQ
Sbjct: 228 VEASQALEKEALDLESKRTKLTSGPSRLEALQAEKEALTADVEKF-EAVVKSWTVKIQ-- 284
Query: 200 WLQESDELSLHCDHELGISFWDVQAYPASDAE 295
E +E S+H + EL D Q A + E
Sbjct: 285 ---EKEESSVHLEKELEAKLMDQQRIAAENEE 313
>05_04_0189 -
18911654-18913207,18913310-18913528,18914034-18914367,
18914425-18914592,18914633-18914724,18914814-18914848,
18915377-18915441,18915565-18915669,18916373-18916434,
18916732-18916860,18918050-18918184,18918336-18918457,
18918808-18918965,18919215-18919372,18919447-18919780,
18919853-18919978,18920213-18920443,18920520-18920692
Length = 1399
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 502 HTASSKQRAAYVPLLRRAGIQDPVRNQRSTTP 597
HTA+ A V ++ AG+ +RN ++TTP
Sbjct: 422 HTAAMINDAELVKIILEAGVDVNIRNAQNTTP 453
>01_05_0260 + 20121679-20122101,20122188-20122853
Length = 362
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 26 EVSASHIIKARSIDLNNAYGLAMETRLEKIVEPTGYK 136
+VSA I ID+ A+GL+++ + + ++ P YK
Sbjct: 315 DVSAEAAIDKDGIDMAEAFGLSVQLKEKLLLVPVDYK 351
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,888,415
Number of Sequences: 37544
Number of extensions: 414892
Number of successful extensions: 1089
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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