Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0077
(623 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 69 2e-12
SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 64 7e-11
SB_5727| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 58 6e-09
SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 52 4e-07
SB_45004| Best HMM Match : Peptidase_M1 (HMM E-Value=0.0054) 45 4e-05
SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 44 1e-04
SB_32141| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_16863| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_13904| Best HMM Match : Peptidase_M1 (HMM E-Value=3.7e-08) 40 0.002
SB_35142| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-13) 40 0.002
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11) 35 0.062
SB_7564| Best HMM Match : Peptidase_M1 (HMM E-Value=6.8e-08) 31 1.0
SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39) 29 3.1
SB_45006| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_22957| Best HMM Match : EGF (HMM E-Value=7e-39) 29 3.1
SB_2152| Best HMM Match : EGF (HMM E-Value=0) 29 3.1
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_22074| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_8742| Best HMM Match : TPR_2 (HMM E-Value=0.00046) 28 7.1
SB_44839| Best HMM Match : RVT_1 (HMM E-Value=0.071) 27 9.4
SB_5253| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_22827| Best HMM Match : TM_helix (HMM E-Value=0.57) 27 9.4
>SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 1240
Score = 69.3 bits (162), Expect = 2e-12
Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 1/169 (0%)
Frame = +2
Query: 101 RLEKIVEPTGYKLDLEPFLD-DGVYRGTVKIQLKWLQESDELSLHCDHELGISFWDVQAY 277
RL V P Y + L P LD D + G V +++K +++D + +H ++ ++ ++V
Sbjct: 132 RLPSSVTPEEYTVILRPKLDPDFTFSGNVSVRVKCNEDTDYIFIHAK-QMRLTKFEV--- 187
Query: 278 PASDAEHPVERVVVKELRMDVKKPILTLYFEKPIPKGTEGHIELTYRGNIHMGVTEGFFK 457
+ + P++ + E K + ++ + + KG +++ + + +T GF+K
Sbjct: 188 -LNQGKEPLK---IMETANCEKLEMFSIKVKGGLKKGESYVLQIDFNAVLAEKLT-GFYK 242
Query: 458 STYTTDQGEEIMVAATQLRPNNARRMFPCFDEPGYKTPFEISVARPREH 604
S+Y G +A T P +AR FPCFDEP K F + + R EH
Sbjct: 243 SSYKDKDGNTRYLATTHFEPTDARAAFPCFDEPALKAVFNMVIYRKAEH 291
>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 890
Score = 64.5 bits (150), Expect = 7e-11
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +2
Query: 401 IELTYRGNIHMGVTEGFFKSTYTTDQGEEIMVAATQLRPNNARRMFPCFDEPGYKTPFEI 580
+ ++Y+G G+ GF++S++T + G+ + ATQ P AR FPCFDEPG K F I
Sbjct: 196 VSISYKGFYSKGL-RGFYRSSFTQNNGQRVYFVATQFEPVKAREAFPCFDEPGMKATFNI 254
Query: 581 SVA-RP 595
++A RP
Sbjct: 255 TIAHRP 260
>SB_5727| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 904
Score = 58.0 bits (134), Expect = 6e-09
Identities = 44/162 (27%), Positives = 72/162 (44%)
Frame = +2
Query: 101 RLEKIVEPTGYKLDLEPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWDVQAYP 280
RL K V P Y + L L + + GT +I L Q +D + +H + ++ V
Sbjct: 240 RLPKNVVPVHYNVYLNIILKELRFTGTSEIHLNVTQSTDLILVH-SARMNVTSGSVMN-K 297
Query: 281 ASDAEHPVERVVVKELRMDVKKPILTLYFEKPIPKGTEGHIELTYRGNIHMGVTEGFFKS 460
A D + +K+ K L E + G + L + + + G ++S
Sbjct: 298 AGDQQ------AIKKRFWFEKNQFTVLQMETALEPGPYV-VMLGFEAFLSDQLN-GLYRS 349
Query: 461 TYTTDQGEEIMVAATQLRPNNARRMFPCFDEPGYKTPFEISV 586
YT G+ + +A TQ +P +AR+ FPC DEP K F I++
Sbjct: 350 QYTHKDGKNVTIATTQFQPTDARKAFPCLDEPALKATFNITI 391
>SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 791
Score = 52.0 bits (119), Expect = 4e-07
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +2
Query: 446 GFFKSTYTTDQGEEIMVAATQLRPNNARRMFPCFDEPGYKTPFEISVARPRE 601
G F+ TY G + ATQ P+ AR FPCFDEP K F ++ P +
Sbjct: 115 GLFRGTYKKADGTDAYFVATQFEPHYARTAFPCFDEPALKATFNTTITHPSD 166
>SB_45004| Best HMM Match : Peptidase_M1 (HMM E-Value=0.0054)
Length = 236
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = +2
Query: 389 TEGHIELTYRGNIHMGVTEGFFKSTYTTDQGEEIMVAATQLRPNNARRMFPCFDEPGYKT 568
T G L N +G G F Y A+Q P AR +FPCFDEP +K
Sbjct: 35 TPGQYSLQVTFNGLLGDEVGLFVGNYKIADNATRSYVASQFGPAEARSVFPCFDEPAFKA 94
Query: 569 PFEISVA 589
F ++++
Sbjct: 95 TFNLTIS 101
>SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 854
Score = 44.0 bits (99), Expect = 1e-04
Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 25/195 (12%)
Frame = +2
Query: 95 ETRLEKIVEPTGYKLDLEPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWDVQA 274
+ RL V P Y L L P L G + G V+I + LQE++ + +H + G++
Sbjct: 92 KVRLPTNVIPVHYDLFLHPNLTTGTFEGEVEILVDVLQETEYILVHTN---GMTVSKSSV 148
Query: 275 YPASDAEHPVERVVVKELRMDVKKPILTLYFEKPIPKGTEGHIELTYRGNIHMGVTEGFF 454
+ A+ E E + VKE+ + K+ ++ + + YR + GF+
Sbjct: 149 HEATK-ESQKEPLAVKEM-FEYKENFYYVFIMSEKLSVGRYIVRMDYRAPFSSELN-GFY 205
Query: 455 KSTYTT-------------DQGEEIMV------------AATQLRPNNARRMFPCFDEPG 559
STY +QG + +V A T+ P +AR+ PCFDEP
Sbjct: 206 LSTYKDKRVFPYAKHGDGHNQGFKAIVSKAAFKLRIPKLATTKFEPTDARKALPCFDEPA 265
Query: 560 YKTPFEISVARPREH 604
K F ++ ++
Sbjct: 266 MKATFTTTIVHEPDY 280
>SB_32141| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 488 IMVAATQLRPNNARRMFPCFDEPGYKTPFEISVARPREH 604
+ +A T P +AR FPCFDEP K F + + R EH
Sbjct: 40 LYLATTHFEPTDARAAFPCFDEPALKAVFNMVIYRKAEH 78
>SB_16863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 43
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 497 AATQLRPNNARRMFPCFDEPGYKTPFEISVA 589
AATQ ++AR+ FPC DEP K F +++A
Sbjct: 9 AATQFERSDARKAFPCLDEPALKATFNVTIA 39
>SB_13904| Best HMM Match : Peptidase_M1 (HMM E-Value=3.7e-08)
Length = 326
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 497 AATQLRPNNARRMFPCFDEPGYKTPFEISVA 589
AATQ ++AR+ FPC DEP K F +++A
Sbjct: 215 AATQFERSDARKAFPCLDEPALKATFNVTIA 245
>SB_35142| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-13)
Length = 302
Score = 39.5 bits (88), Expect = 0.002
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Frame = +2
Query: 95 ETRLEKIVEPTGYKLDLEPFLDDGV-YRGTVKIQLKWLQESDELSLHCDHELGISFWDVQ 271
+ RL K V PT Y L + P L + G I +K ++ + + LH +L I + +
Sbjct: 89 DIRLPKDVVPTKYTLTMHPVLSGKFDFTGKAAIDIKVVKNTKYIVLH-SKKLKIKSYRL- 146
Query: 272 AYPASDAEHPVERVVVKELRMDVKKPILTLYFEKPIPKGTEGHIELTYRGNIHMGVTEGF 451
+D + E V + + ++ K L L ++ + KG + I+L + G + + GF
Sbjct: 147 ---VNDKK---ENVKIARMLLNEKLEQLLLEPKQGLVKGQKFTIKLEFSGELSNKMA-GF 199
Query: 452 FKSTYTTDQGE 484
+KS+Y T GE
Sbjct: 200 YKSSYKTRNGE 210
>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
Length = 1771
Score = 34.7 bits (76), Expect = 0.062
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -2
Query: 424 IASIRQLYMTFGSLGDRLFEIQSQYRLFDVHTKLLHNDTFYWMF 293
I SIRQ+ T G I +RL DVH ++ ND +W F
Sbjct: 1370 ITSIRQVIKTANEYGKNARIILELFRLLDVHDEMALNDIQFWSF 1413
>SB_7564| Best HMM Match : Peptidase_M1 (HMM E-Value=6.8e-08)
Length = 457
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 503 TQLRPNNARRMFPCFDEPGYKTPFEISVARPRE 601
TQ + +AR + PC D PG K + V+ P++
Sbjct: 83 TQCQAIHARSIIPCQDSPGVKATYSAKVSVPKD 115
>SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 364 FRKADPQGNRRSYRVDVSRQYSHGCHRGILQIY--VHDRSG*RDYGSSHTAS 513
++++ +GN+RSY R Y G RG + Y ++RS R Y S+ S
Sbjct: 149 YKRSYERGNKRSYERGYKRGYKRGYERGYERSYKRSYERSYERSYKRSYVRS 200
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +1
Query: 328 SYGRQ-KADIDFVFRKADPQGNRRSYRVDVSRQYSHGCHRGILQIYV--HDRSG*RDYGS 498
SY R K + + ++ +G +RSY R Y G RG + Y ++RS R Y
Sbjct: 128 SYERSYKRGYERSYERSYERGYKRSYERGNKRSYERGYKRGYKRGYERGYERSYKRSYER 187
Query: 499 SHTASSKQ 522
S+ S K+
Sbjct: 188 SYERSYKR 195
>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
Length = 1510
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 101 RLEKIVEPTGYKLDLEPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGIS 256
RL V P Y L L+ + Y G+V I + Q +D + LHC L ++
Sbjct: 1446 RLPTNVIPNNYDLYLDVNMKKKNYTGSVNILVTVTQSTDLVILHCKGSLRVT 1497
>SB_45006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 101 RLEKIVEPTGYKLDLEPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGIS 256
RL V P Y L L+ + Y G+V I + Q +D + LHC L ++
Sbjct: 32 RLPTNVIPNNYDLYLDVNMKKKNYTGSVNILVTVTQSTDLVILHCKGSLRVT 83
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 292 GTSSRTCRCEGASYGRQKADIDFVFRKADP 381
G ++ TC C G+ Y K D+D K P
Sbjct: 333 GVNNHTCNCPGSGYEGPKCDVDINECKVQP 362
>SB_22957| Best HMM Match : EGF (HMM E-Value=7e-39)
Length = 201
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 292 GTSSRTCRCEGASYGRQKADIDFVFRKADP 381
G ++ TC C G+ Y K D+D K P
Sbjct: 127 GVNNHTCNCPGSGYEGPKCDVDINECKVQP 156
>SB_2152| Best HMM Match : EGF (HMM E-Value=0)
Length = 1603
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 292 GTSSRTCRCEGASYGRQKADIDFVFRKADP 381
G ++ TC C G+ Y K D+D K P
Sbjct: 151 GVNNHTCNCPGSGYEGPKCDVDINECKVQP 180
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 582 LISNGVLYPGSSKQGNIRRALFGRSCVAATIIS 484
LI +G L+ S+ GN+ F RSCV + + S
Sbjct: 3611 LILSGPLFKACSELGNVTLQFFFRSCVKSVVTS 3643
>SB_22074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 572
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = +1
Query: 337 RQKADIDFVFRKADPQGN----RRSYRVDVSRQYSHG-CHRG 447
R A +D F DP+GN R Y+ V + Y+ G CH G
Sbjct: 485 RVDAPLDLSFASIDPRGNFATKRGEYQTSVEKLYTAGDCHYG 526
>SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 745
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 39 VTLSKHEASTSITHMGSLWKPVWRRSWSRLDIS 137
V+ KH+ +++ + LWKP R S D+S
Sbjct: 244 VSFDKHDLNSNSCNSNQLWKPSLRSSSKAFDVS 276
>SB_8742| Best HMM Match : TPR_2 (HMM E-Value=0.00046)
Length = 940
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 5 AYSLPPEEVSASHIIKARSIDLNNAYGLAMETRLEKIVEPTGYKLDLEPFLD 160
++++PPE S I+A +NN + L + T + +P K D E LD
Sbjct: 401 SFAIPPELQSEHQAIEAEFKAMNNPFPLNIATNAGYVADP--IKADTETALD 450
>SB_44839| Best HMM Match : RVT_1 (HMM E-Value=0.071)
Length = 351
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 212 SDELSLHCDHELGISFWDVQAYPA 283
SDE +LH H + IS WD +A PA
Sbjct: 14 SDE-ALHAFHSVLISIWDEEAMPA 36
>SB_5253| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 458 STYTTDQGEEIMVAATQLRPNNAR 529
ST T D G I +AA++LR NN +
Sbjct: 169 STPTLDSGMHISIAASRLRSNNVK 192
>SB_22827| Best HMM Match : TM_helix (HMM E-Value=0.57)
Length = 969
Score = 27.5 bits (58), Expect = 9.4
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Frame = +2
Query: 278 PASDAEHP--VE--RVVVKELRMDVKKPILTLYFEKPIP---KGTEG-HIELTYRGNIHM 433
PA+ +HP VE + + K R++ K + E P+ +G EG H E T+ G IH
Sbjct: 703 PATRPKHPGRVEAGKRLAKWNRLNRAKKKAVQHVESPVACESQGREGYHAEDTF-GIIHT 761
Query: 434 GVTEGFFKSTYTTDQGEEIMVAATQLRP 517
V EG S+ ++ G +VAA P
Sbjct: 762 PVPEGNSVSSASSVMGTRELVAAFTRTP 789
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,339,462
Number of Sequences: 59808
Number of extensions: 471715
Number of successful extensions: 1232
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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