Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0077
         (623 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ974172-1|ABJ52812.1|  409|Anopheles gambiae serpin 13 protein.       31   0.039
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    26   0.85 
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    26   0.85 
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    23   7.9  
AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    23   7.9  

>DQ974172-1|ABJ52812.1|  409|Anopheles gambiae serpin 13 protein.
          Length = 409

 Score = 30.7 bits (66), Expect = 0.039
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -1

Query: 314 RHVLLDVPRQMLDTLVHPKS*CQAHGHNAS*AHRTLAATSVGFSRFLCRLRRRGTALSPA 135
           RH+  D PR  +DTL   +S   +   N        AAT+ G  +F   ++R G + SPA
Sbjct: 119 RHMSGDFPRDYVDTLKQLRSPLLSISRNRYRHECNSAATTYGTMQFAQGVKRSGGSQSPA 178


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 26.2 bits (55), Expect = 0.85
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 152 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 265
           ++  G+++ T KI + W    D+   HC+ + G   +D
Sbjct: 138 YVPPGIFKSTCKIDITWFPFDDQ---HCEMKFGSWTYD 172


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 26.2 bits (55), Expect = 0.85
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 152 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 265
           ++  G+++ T KI + W    D+   HC+ + G   +D
Sbjct: 138 YVPPGIFKSTCKIDITWFPFDDQ---HCEMKFGSWTYD 172


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +2

Query: 152 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 265
           ++  G+++ T KI + W    D+    C+ + G   +D
Sbjct: 121 YVPPGIFKSTCKIDITWFPFDDQ---RCEMKFGSWTYD 155


>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +2

Query: 152 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 265
           ++  G+++ T KI + W    D+    C+ + G   +D
Sbjct: 153 YVPPGIFKSTCKIDITWFPFDDQ---RCEMKFGSWTYD 187


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 700,605
Number of Sequences: 2352
Number of extensions: 14966
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 60632475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)