Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0076
         (472 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3CKF8 Cluster: Putative uncharacterized protein; n=2; ...    34   1.4  
UniRef50_Q6NNV9 Cluster: RH24371p; n=9; Endopterygota|Rep: RH243...    34   1.4  
UniRef50_Q07I93 Cluster: Putative uncharacterized protein; n=1; ...    33   2.4  
UniRef50_A2GC19 Cluster: Putative uncharacterized protein; n=1; ...    33   2.4  
UniRef50_A5ZIC6 Cluster: Putative uncharacterized protein; n=1; ...    33   3.2  
UniRef50_A3EUA7 Cluster: Putative uncharacterized protein; n=1; ...    33   3.2  
UniRef50_A7CP12 Cluster: Type III restriction protein res subuni...    33   4.2  
UniRef50_Q5RIU8 Cluster: Novel protein similar to vertebrate dis...    32   7.3  
UniRef50_Q2TAE4 Cluster: LOC494865 protein; n=6; Euteleostomi|Re...    31   9.7  
UniRef50_A0CPR1 Cluster: Chromosome undetermined scaffold_23, wh...    31   9.7  

>UniRef50_A3CKF8 Cluster: Putative uncharacterized protein; n=2;
           Streptococcus|Rep: Putative uncharacterized protein -
           Streptococcus sanguinis (strain SK36)
          Length = 240

 Score = 34.3 bits (75), Expect = 1.4
 Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
 Frame = -2

Query: 288 QEFARSGSSLSFLSTNRLRAWLS-----VSRLISGVWSLRRSLCFVCLSRQLSPDAVAVM 124
           QEF +SG   +FL+ +  +AWL+     ++ L+  ++S+    CF+ +  +   D    +
Sbjct: 74  QEFVKSGMRTNFLTVSNRKAWLAGKILFLAMLLLILYSIMIGSCFLVMLARFGLDFSWSL 133

Query: 123 L*PERNFAFISLMLSIVVSLIKNGMCL 43
           L     ++F  L+ ++ ++ +  G+ L
Sbjct: 134 LGKFLYYSFFGLLSNLFLAFLTAGLAL 160


>UniRef50_Q6NNV9 Cluster: RH24371p; n=9; Endopterygota|Rep: RH24371p
           - Drosophila melanogaster (Fruit fly)
          Length = 669

 Score = 34.3 bits (75), Expect = 1.4
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 243 LYLKMKATSPNGQIPEXWGPKDLSWSKYLASVG 341
           L + +   +P   +PE +G  +LSW+KYL S+G
Sbjct: 294 LMIPISEINPAASLPEAFGQLNLSWAKYLISIG 326


>UniRef50_Q07I93 Cluster: Putative uncharacterized protein; n=1;
           Rhodopseudomonas palustris BisA53|Rep: Putative
           uncharacterized protein - Rhodopseudomonas palustris
           (strain BisA53)
          Length = 114

 Score = 33.5 bits (73), Expect = 2.4
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -2

Query: 348 PVCPRWPNTWTSSSPLVPXLQEFARSGSSLSFLSTNRLRAWLSVSRLISGVWSLR 184
           P  P WP   T++  + P  Q  AR G S+S  S   L   +SVS     +W+ R
Sbjct: 26  PRKPWWPADRTAAPRVAPAHQSRARPGRSVSVASVLALVVRVSVSAASGAIWAAR 80


>UniRef50_A2GC19 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 1034

 Score = 33.5 bits (73), Expect = 2.4
 Identities = 21/69 (30%), Positives = 32/69 (46%)
 Frame = -1

Query: 343 LPTLAKYLDQLKSFGPXSSGICPFGLVAFIFKYKSSESMAKCFSSNKWSMVASAVSMFCL 164
           + T  +Y+     F P  S IC    + ++F  +S+ +  KCF SN WSM +    +F  
Sbjct: 512 IATALQYIFLSGEFEPRKSNIC----IVWLFGQQSTRAR-KCFESN-WSMASQLFKVFIS 565

Query: 163 PEPAVKSGC 137
             P   S C
Sbjct: 566 RSPISFSSC 574


>UniRef50_A5ZIC6 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides caccae ATCC 43185|Rep: Putative
           uncharacterized protein - Bacteroides caccae ATCC 43185
          Length = 405

 Score = 33.1 bits (72), Expect = 3.2
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +3

Query: 237 DDLYLKMKATSPNGQIPEXWGPKDLSWSKYLASVGKPVNNRDHVIIENF 383
           D  Y K +    NG  PE   P+D++   Y+  VG  V+  D+VI+E++
Sbjct: 254 DRCYEKYRINITNGGYPER--PEDMNSDTYIKIVGTKVHMADYVILEDY 300


>UniRef50_A3EUA7 Cluster: Putative uncharacterized protein; n=1;
           Leptospirillum sp. Group II UBA|Rep: Putative
           uncharacterized protein - Leptospirillum sp. Group II
           UBA
          Length = 99

 Score = 33.1 bits (72), Expect = 3.2
 Identities = 20/63 (31%), Positives = 26/63 (41%)
 Frame = +3

Query: 135 PHPDLTAGSGKQNIETAEATILHLLDEKHLAMLSDDLYLKMKATSPNGQIPEXWGPKDLS 314
           P     AG   + I    A +L     +     SDDL    K +S +  +PE WGP   S
Sbjct: 26  PKVGRVAGKALRTIRQQAAPVL-----QEFRSFSDDLLSDPKRSSRDETLPEGWGPLPQS 80

Query: 315 WSK 323
           W K
Sbjct: 81  WQK 83


>UniRef50_A7CP12 Cluster: Type III restriction protein res subunit;
           n=1; Opitutaceae bacterium TAV2|Rep: Type III
           restriction protein res subunit - Opitutaceae bacterium
           TAV2
          Length = 687

 Score = 32.7 bits (71), Expect = 4.2
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -1

Query: 163 PEPAVKSGCGGCDVM--TGKEFRVHFFDALNCGFAH*KRDVLVGLHNTGQVV 14
           PEP   +  GG   +  T +++++  FDA++ GFAH +R ++V     G+ V
Sbjct: 39  PEPGTPADLGGLPAVNWTYRDYQLAAFDAIDHGFAHVQRILIVLATGLGKTV 90


>UniRef50_Q5RIU8 Cluster: Novel protein similar to vertebrate
           discoidin domain receptor family, member 2; n=4; Danio
           rerio|Rep: Novel protein similar to vertebrate discoidin
           domain receptor family, member 2 - Danio rerio
           (Zebrafish) (Brachydanio rerio)
          Length = 804

 Score = 31.9 bits (69), Expect = 7.3
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 406 PTFPEGLIKFSMITWSRLLTGLPTLAKYLDQLKSFGPXS 290
           P  P  L K  M  WSR +T  P+  K    L++F P S
Sbjct: 766 PLCPSSLFKLMMRCWSRDITDRPSFNKLHQALRTFAPHS 804


>UniRef50_Q2TAE4 Cluster: LOC494865 protein; n=6; Euteleostomi|Rep:
           LOC494865 protein - Xenopus laevis (African clawed frog)
          Length = 516

 Score = 31.5 bits (68), Expect = 9.7
 Identities = 22/84 (26%), Positives = 35/84 (41%)
 Frame = +3

Query: 120 ITSQPPHPDLTAGSGKQNIETAEATILHLLDEKHLAMLSDDLYLKMKATSPNGQIPEXWG 299
           +T  PP PD T  S ++   T + + LH       + L  ++Y    + SPN  IP    
Sbjct: 64  LTVTPPTPDTTPDSEQRGFSTNDQS-LHRKSAPLGSSLQKEMYCAETSDSPNYPIPRLII 122

Query: 300 PKDLSWSKYLASVGKPVNNRDHVI 371
            +D S +  L     P+     V+
Sbjct: 123 TQDCSSNSCLTFTSPPLPETTSVL 146


>UniRef50_A0CPR1 Cluster: Chromosome undetermined scaffold_23, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_23,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 333

 Score = 31.5 bits (68), Expect = 9.7
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
 Frame = +3

Query: 114 PVITSQPPHPDLTAGSGKQNIETAEATILHLLDEKHLAMLSDDLYLKMKATSPNGQIPEX 293
           P+I S    P+   G+  Q +++ +A I+   D+KH   LS  LYL+ K  +   Q    
Sbjct: 163 PIIYSNSQIPNDDKGNFNQQVQSIQAQII---DQKHKQRLSVKLYLQQKLNNSKTQSSAI 219

Query: 294 WGPKDLSWSKYLASVGKPVNNRDHVI--IENFIKPSGKVGNFCTCCDMTLKGP 446
                +++SKY  S+   +     ++  + +  KP  K  N   C    +  P
Sbjct: 220 L--PTIAYSKYHNSLSNLLLQPMKILKTLGDEQKPLKKEYNLLNCGSSLINSP 270


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 493,080,327
Number of Sequences: 1657284
Number of extensions: 9639230
Number of successful extensions: 30191
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 29298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30186
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26030843530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)