Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0076
         (472 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   1.9  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   1.9  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   1.9  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   3.3  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   3.3  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   7.6  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   7.6  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 298 DQRT*AGPSIWPAW 339
           +++T + P +WPAW
Sbjct: 180 EKKTESQPMLWPAW 193


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 338 HAGQILGPAQVLWSP 294
           H G  +GP Q +W P
Sbjct: 33  HQGAQMGPEQQMWEP 47


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 338 HAGQILGPAQVLWSP 294
           H G  +GP Q +W P
Sbjct: 33  HQGAQMGPEQQMWEP 47


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 120 ITSQPPHPDLTAGSGKQNIETAEAT 194
           I+S P H  LTA   K   ETA+ T
Sbjct: 111 ISSIPRHEKLTAAEIKLTRETAKNT 135


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 373 MITWSRLLTGLPTLAKYLDQ 314
           +I WS  L+  P + KYLD+
Sbjct: 452 VIIWSSNLSKRPYIYKYLDK 471


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = +3

Query: 285 PEXWGPKDLSWSKYLASVGKPVNN 356
           P  WG  D  W +   +V   V N
Sbjct: 219 PLYWGGADTPWQREYENVNSTVVN 242


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 367 TWSRLLTGLPTLAK 326
           TW+RLL  L + AK
Sbjct: 93  TWTRLLKNLESCAK 106


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,957
Number of Sequences: 336
Number of extensions: 2379
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)