Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0076
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    30   0.15 
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    26   3.3  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    25   4.4  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   4.4  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   5.8  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   7.7  
SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   7.7  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   7.7  

>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 30.3 bits (65), Expect = 0.15
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 120 ITSQPPHPDLTAGSGKQNIETAEATILHLLDEKHLAMLSDDLYLKMKATSPNGQIP 287
           I    P P  +A   + ++ +A+      L+   LAML   +       SPNGQ+P
Sbjct: 401 IPRMSPSPSASALKTQSHVPSAKVPPTSKLNHAQLAMLKSQIVAYNCLNSPNGQVP 456


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 117 VITSQPPHPDLTAGSGKQNIETAEATILHLLDEK 218
           V TS P H   TA   ++    A A++L +LD K
Sbjct: 301 VPTSSPLHQSTTANHPEKTPSRAAASLLSILDSK 334


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +2

Query: 146 LNCRLRQTKHRDRRSDHTPLIRRETLSHALRRFVLKNESDEPERANS*RXGTKGLELVQV 325
           L  R+   K R+R+++ T L+R    + +   F    + D+ E  +     T+ LEL   
Sbjct: 262 LTVRVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDDESDDGLDDKTELLELDYQ 321

Query: 326 FGQ 334
            G+
Sbjct: 322 LGE 324


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 13/63 (20%), Positives = 28/63 (44%)
 Frame = +3

Query: 141 PDLTAGSGKQNIETAEATILHLLDEKHLAMLSDDLYLKMKATSPNGQIPEXWGPKDLSWS 320
           PD+   +  ++++  + T+    +E+   + +DDL +   A  P            L+W 
Sbjct: 250 PDIQKVAQSEDVDAEQDTVADSKEEERRDIANDDLIVNANAKEPMHHFSFTDLDTLLNWP 309

Query: 321 KYL 329
           KY+
Sbjct: 310 KYV 312


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 339 PRWPNTWTSSSPLVPXLQEFARSGSSLSFLSTNRLR 232
           P  P    SSSPL+P     + S   LS LST+ L+
Sbjct: 120 PSTPELPPSSSPLLPPNGSESSSPIPLSLLSTSSLQ 155


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = +2

Query: 65   SETTIESIKEMNAKFLSGHNITATASGLNCRLRQTKHRDRRSDHTPLIRRETLSHALRRF 244
            S +T  S+     K  +   +T   S  N RL + + R ++     +   E L ++LRR 
Sbjct: 1115 SLSTNRSLYTQYTKSSNSSKMTRNTSKNNRRLERKRARGKKGT---VFEEEYLVNSLRRL 1171

Query: 245  VLKNESDEPE 274
            + + E   PE
Sbjct: 1172 IARVEEIRPE 1181


>SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 95

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = +3

Query: 237 DDLYLKMKATSPNGQI----PEXWGPKDLSWSKYLASVGKPVNNRDHVIIENFIKPSGKV 404
           DD++   KA   N +      E   PK  + +K   S  KP NN+D +    F+ P G  
Sbjct: 4   DDIFASKKANPANEKSNDSKSEAKAPKKGAKTKSTPSRPKPTNNQDDL----FLDPKGAS 59

Query: 405 G 407
           G
Sbjct: 60  G 60


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 356 PRPRYHRELY*TFRESRQFLHLL 424
           P  +++R  Y T+ ESR + HL+
Sbjct: 491 PEVQWNRAFYKTYYESRSWFHLI 513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,873
Number of Sequences: 5004
Number of extensions: 39361
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)