Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0076
         (472 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0577 + 22461831-22462023,22462378-22463160,22463380-224649...    28   3.3  
05_04_0280 - 19752112-19752451,19754104-19755587                       28   3.3  
08_02_0227 - 14485676-14487316                                         28   4.4  
04_01_0213 - 2692253-2694562                                           28   4.4  
01_05_0271 + 20276965-20278674                                         27   5.8  

>06_03_0577 +
           22461831-22462023,22462378-22463160,22463380-22464936,
           22465082-22465449
          Length = 966

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/67 (25%), Positives = 30/67 (44%)
 Frame = -1

Query: 352 LTGLPTLAKYLDQLKSFGPXSSGICPFGLVAFIFKYKSSESMAKCFSSNKWSMVASAVSM 173
           LT L  L   ++      P + G CP G++A  +   S     + FSS++   ++   +M
Sbjct: 394 LTQLSELYLSMNAFTGEIPSALGKCPLGVLALAYNKLSGNIPKEIFSSSRLRSISLLSNM 453

Query: 172 FCLPEPA 152
              P P+
Sbjct: 454 LVGPMPS 460


>05_04_0280 - 19752112-19752451,19754104-19755587
          Length = 607

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 348 PVCPRWPNTWTSSSPLVPXLQEFARS 271
           P   RWP++W   SP  P L  FA S
Sbjct: 45  PAAARWPSSW---SPAAPPLHSFAAS 67


>08_02_0227 - 14485676-14487316
          Length = 546

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 460 NRTCRGPFSVISQQVQKLPTFPEGLIKFSMITWSRLLTGLPTLAKYLDQL 311
           N +     + I + +Q+ P   E  I+FS   WS+ L   P LA YL+ +
Sbjct: 367 NGSAAAAATAIGELLQRCPVIRELWIRFS---WSKYLHESPDLAGYLESM 413


>04_01_0213 - 2692253-2694562
          Length = 769

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 258 SFLSTNRLRAWLSVSRLISGVW-SLRRSLCFVCLSRQLSPD 139
           SFL  +R R+WL  S L SG W  +RRS+  +  SR  S D
Sbjct: 339 SFLH-DRPRSWLHHSLLCSGKWRMIRRSIVSLDPSRFFSKD 378


>01_05_0271 + 20276965-20278674
          Length = 569

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 388 LIKFSMITWSRLLTGLPTLAKYLDQLKSF 302
           L+   ++TWS L+TGL  + KY +    F
Sbjct: 281 LLDADLVTWSSLITGLLHICKYEESFGLF 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,653,697
Number of Sequences: 37544
Number of extensions: 275582
Number of successful extensions: 857
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)