Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0076
         (472 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      32   0.28 
SB_26841| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_47305| Best HMM Match : I-set (HMM E-Value=0)                       29   1.9  
SB_29434| Best HMM Match : Peptidase_A17 (HMM E-Value=3.1e-25)         29   2.6  
SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)         29   2.6  
SB_26007| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_43732| Best HMM Match : Rop (HMM E-Value=6.5)                       28   4.5  
SB_25786| Best HMM Match : Rop (HMM E-Value=6.5)                       28   4.5  
SB_43733| Best HMM Match : Rop (HMM E-Value=6.2)                       27   7.8  

>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
 Frame = -2

Query: 249 STNRLRAWLSVSRLISGVW-SLRRS--LCFVCLSRQLSPDAVAVML*PERNFAFISLMLS 79
           +T  L +   VS + S VW S+ RS  +  +CLS   S + + + L   R++  I + LS
Sbjct: 698 TTTHLSSDQQVSYVNSAVWLSMLRSYKIIGICLSMLRSYEIIGICLSMLRSYEIIGICLS 757

Query: 78  IVVSLIKNGMCLS 40
           ++ S    G+CLS
Sbjct: 758 MLRSYEIIGICLS 770



 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 168 VCLSRQLSPDAVAVML*PERNFAFISLMLSIVVSLIKNGMCLS 40
           +CLS   S + + + L   R++ FI + LS++ S    G+CLS
Sbjct: 754 ICLSMLRSYEIIGICLSMLRSYKFIGICLSMLRSYKFIGICLS 796



 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 168 VCLSRQLSPDAVAVML*PERNFAFISLMLSIVVSLIKNGMCLS 40
           +CLS   S + + + L   R++ FI + LS++ S    G+CLS
Sbjct: 819 ICLSMLRSYEIIGICLSMLRSYKFIGICLSMLRSYKFIGICLS 861



 Score = 28.3 bits (60), Expect = 3.4
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
 Frame = -2

Query: 228 WLSVSR---LISGVWSLRRS--LCFVCLSRQLSPDAVAVML*PERNFAFISLMLSIVVSL 64
           WLS+ R   +I    S+ RS  +  +CLS   S + + + L   R++  I + LS++ S 
Sbjct: 716 WLSMLRSYKIIGICLSMLRSYEIIGICLSMLRSYEIIGICLSMLRSYEIIGICLSMLRSY 775

Query: 63  IKNGMCLS 40
              G+CLS
Sbjct: 776 KFIGICLS 783



 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 168 VCLSRQLSPDAVAVML*PERNFAFISLMLSIVVSLIKNGMCLS 40
           +CLS   S   + + L   R++ FI + LS++ S    G+CLS
Sbjct: 767 ICLSMLRSYKFIGICLSMLRSYKFIGICLSMLRSYEIIGICLS 809



 Score = 27.1 bits (57), Expect = 7.8
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -2

Query: 192 SLRRSLCFV--CLSRQLSPDAVAVML*PERNFAFISLMLSIVVSLIKNGMCLS 40
           S+ RS  F+  CLS   S + + + L   R++  I + LS++ S    G+CLS
Sbjct: 783 SMLRSYKFIGICLSMLRSYEIIGICLSMLRSYEIIGICLSMLRSYEIIGICLS 835


>SB_26841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +2

Query: 44  KHIPFLMSET--TIESIKEMNAKFLSGHNITATASGLNCRLRQTKHRDRRS-DHTPLIRR 214
           KH+P   +E       + E++ +      I +T   L+ R+   K +   S + TP  RR
Sbjct: 703 KHVPPNTTEEDHARTEVNELHRELNQLMTIESTGGSLSKRMPSPKGKASPSLEGTPYSRR 762

Query: 215 ETLSHALRRFVLKNESDE 268
            ++S  LRRF   + +DE
Sbjct: 763 SSVSERLRRFSSGHSADE 780


>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
          Length = 5832

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 339  GKPVNNRDHVIIENFIKPSGKVGNFCTCCDMTLKGPRQVLFN 464
            G  V +RD+V    F +PS K G    C      G   +LFN
Sbjct: 4697 GLDVGSRDNVYFLRFARPSVKDGGLYKCVATNEHGEASMLFN 4738


>SB_29434| Best HMM Match : Peptidase_A17 (HMM E-Value=3.1e-25)
          Length = 416

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 89  KEMNAKFLSGHNITATASGLNCRLRQTKHRDRRSDHTPLIRRETLS 226
           + +N   L GH++T +  G+ CR R  +HR      +   RR  LS
Sbjct: 156 ESLNQHLLQGHDLTNSLLGVLCRFRM-RHRRNVQSRSRKRRRPRLS 200


>SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)
          Length = 1898

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 89  KEMNAKFLSGHNITATASGLNCRLRQTKHRDRRSDHTPLIRRETLS 226
           + +N   L GH++T +  G+ CR R  +HR      +   RR  LS
Sbjct: 78  ESLNQHLLQGHDLTNSLLGVLCRFRM-RHRRNVQSRSRKRRRPRLS 122


>SB_26007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1145

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/46 (23%), Positives = 27/46 (58%)
 Frame = -1

Query: 280 CPFGLVAFIFKYKSSESMAKCFSSNKWSMVASAVSMFCLPEPAVKS 143
           CPFG + +IF+Y +++ + +   +    + A A+ +  LP+  +++
Sbjct: 566 CPFGRIVYIFEYSNAKFLRQ-LQNQVTDINAEALELGTLPQHVIEA 610


>SB_43732| Best HMM Match : Rop (HMM E-Value=6.5)
          Length = 294

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 303 LVPXLQEFARSGSSLSFLSTNRLRAWLSVSRLI 205
           +VP +  +++  S L FLS N L+  L + +L+
Sbjct: 49  VVPHVLSYSKESSDLGFLSNNDLQTVLEIGKLL 81


>SB_25786| Best HMM Match : Rop (HMM E-Value=6.5)
          Length = 294

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 303 LVPXLQEFARSGSSLSFLSTNRLRAWLSVSRLI 205
           +VP +  +++  S L FLS N L+  L + +L+
Sbjct: 49  VVPHVLSYSKESSDLGFLSNNDLQTVLEIGKLL 81


>SB_43733| Best HMM Match : Rop (HMM E-Value=6.2)
          Length = 412

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 303 LVPXLQEFARSGSSLSFLSTNRLRAWLSVSRLI 205
           +VP +  ++   S L FLS N L+  L + +L+
Sbjct: 49  VVPHVLSYSEESSDLGFLSNNDLQTVLEIGKLL 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,352,257
Number of Sequences: 59808
Number of extensions: 309400
Number of successful extensions: 933
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)