Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0076
(472 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC042045-1|AAH42045.1| 890|Homo sapiens GARNL1 protein protein. 30 4.6
AY596971-1|AAT49272.1| 2083|Homo sapiens tuberin-like protein 1 ... 30 4.6
AY596970-1|AAT49271.1| 2036|Homo sapiens tuberin-like protein 1 ... 30 4.6
AY014957-1|AAK00511.1| 3031|Homo sapiens PI-3-kinase-related kin... 30 4.6
AF395444-1|AAM73708.1| 3521|Homo sapiens PI-3-kinase ATX protein. 30 4.6
AF186377-1|AAK58892.1| 2392|Homo sapiens LIP isoform of BLIP pro... 30 4.6
AB061371-1|BAB70696.1| 3657|Homo sapiens phosphatidylinositol 3-... 30 4.6
BC054003-1|AAH54003.1| 1192|Homo sapiens RNASEN protein protein. 29 8.1
BC041162-1|AAH41162.1| 722|Homo sapiens RNASEN protein protein. 29 8.1
AK001121-1|BAA91511.1| 769|Homo sapiens protein ( Homo sapiens ... 29 8.1
AF189011-1|AAF80558.1| 1374|Homo sapiens ribonuclease III protein. 29 8.1
AF116910-1|AAD29637.1| 541|Homo sapiens putative ribonuclease I... 29 8.1
AB209501-1|BAD92738.1| 432|Homo sapiens nuclear RNase III Drosh... 29 8.1
>BC042045-1|AAH42045.1| 890|Homo sapiens GARNL1 protein protein.
Length = 890
Score = 29.9 bits (64), Expect = 4.6
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -1
Query: 127 DVMTGKEFRVHFFDALNCGFAH*KRDVL 44
DV ++F HF++ ++CG H +D++
Sbjct: 15 DVSPNRDFLTHFYNIMHCGLLHIDQDIV 42
>AY596971-1|AAT49272.1| 2083|Homo sapiens tuberin-like protein 1
isoform 2 protein.
Length = 2083
Score = 29.9 bits (64), Expect = 4.6
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -1
Query: 127 DVMTGKEFRVHFFDALNCGFAH*KRDVL 44
DV ++F HF++ ++CG H +D++
Sbjct: 1161 DVSPNRDFLTHFYNIMHCGLLHIDQDIV 1188
>AY596970-1|AAT49271.1| 2036|Homo sapiens tuberin-like protein 1
isoform 1 protein.
Length = 2036
Score = 29.9 bits (64), Expect = 4.6
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -1
Query: 127 DVMTGKEFRVHFFDALNCGFAH*KRDVL 44
DV ++F HF++ ++CG H +D++
Sbjct: 1161 DVSPNRDFLTHFYNIMHCGLLHIDQDIV 1188
>AY014957-1|AAK00511.1| 3031|Homo sapiens PI-3-kinase-related kinase
SMG-1 protein.
Length = 3031
Score = 29.9 bits (64), Expect = 4.6
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 234 SDDLYLKMKATSPNGQIPEXWGPK-DLSWSKYLASVGK 344
+ DL K S GQ+ E WGP+ D+ +K L + G+
Sbjct: 829 AQDLVQHFKKLSTQGQVDEKWGPELDIEKTKLLYTAGQ 866
>AF395444-1|AAM73708.1| 3521|Homo sapiens PI-3-kinase ATX protein.
Length = 3521
Score = 29.9 bits (64), Expect = 4.6
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 234 SDDLYLKMKATSPNGQIPEXWGPK-DLSWSKYLASVGK 344
+ DL K S GQ+ E WGP+ D+ +K L + G+
Sbjct: 1319 AQDLVQHFKKLSTQGQVDEKWGPELDIEKTKLLYTAGQ 1356
>AF186377-1|AAK58892.1| 2392|Homo sapiens LIP isoform of BLIP
protein.
Length = 2392
Score = 29.9 bits (64), Expect = 4.6
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 234 SDDLYLKMKATSPNGQIPEXWGPK-DLSWSKYLASVGK 344
+ DL K S GQ+ E WGP+ D+ +K L + G+
Sbjct: 190 AQDLVQHFKKLSTQGQVDEKWGPELDIEKTKLLYTAGQ 227
>AB061371-1|BAB70696.1| 3657|Homo sapiens phosphatidylinositol
3-kinase-related protein kinase protein.
Length = 3657
Score = 29.9 bits (64), Expect = 4.6
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 234 SDDLYLKMKATSPNGQIPEXWGPK-DLSWSKYLASVGK 344
+ DL K S GQ+ E WGP+ D+ +K L + G+
Sbjct: 1455 AQDLVQHFKKLSTQGQVDEKWGPELDIEKTKLLYTAGQ 1492
>BC054003-1|AAH54003.1| 1192|Homo sapiens RNASEN protein protein.
Length = 1192
Score = 29.1 bits (62), Expect = 8.1
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Frame = +2
Query: 8 HVHNLSCIMQSDKHIPFLMSETTIESIKEMN-AKFLS-GHNITATASGL-NCRLRQTKHR 178
H+ C+M DK I + + + + + + L+ G N + L NC +RQ K+
Sbjct: 832 HIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYG 891
Query: 179 DRRSDHTPLIRR--ETLSHALRRFVLKNESDEPERAN 283
DR+ H + ++ TL + + R L + P R N
Sbjct: 892 DRKVHHMHMRKKGINTLINIMSR--LGQDDPTPSRIN 926
>BC041162-1|AAH41162.1| 722|Homo sapiens RNASEN protein protein.
Length = 722
Score = 29.1 bits (62), Expect = 8.1
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Frame = +2
Query: 8 HVHNLSCIMQSDKHIPFLMSETTIESIKEMN-AKFLS-GHNITATASGL-NCRLRQTKHR 178
H+ C+M DK I + + + + + + L+ G N + L NC +RQ K+
Sbjct: 217 HIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYG 276
Query: 179 DRRSDHTPLIRR--ETLSHALRRFVLKNESDEPERAN 283
DR+ H + ++ TL + + R L + P R N
Sbjct: 277 DRKVHHMHMRKKGINTLINIMSR--LGQDDPTPSRIN 311
>AK001121-1|BAA91511.1| 769|Homo sapiens protein ( Homo sapiens
cDNA FLJ10259 fis, clone HEMBB1000947, highly similar to
Homo sapiens clone HAW100 putative ribonuclease III
mRNA. ).
Length = 769
Score = 29.1 bits (62), Expect = 8.1
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Frame = +2
Query: 8 HVHNLSCIMQSDKHIPFLMSETTIESIKEMN-AKFLS-GHNITATASGL-NCRLRQTKHR 178
H+ C+M DK I + + + + + + L+ G N + L NC +RQ K+
Sbjct: 264 HIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYG 323
Query: 179 DRRSDHTPLIRR--ETLSHALRRFVLKNESDEPERAN 283
DR+ H + ++ TL + + R L + P R N
Sbjct: 324 DRKVHHMHMRKKGINTLINIMSR--LGQDDPTPSRIN 358
>AF189011-1|AAF80558.1| 1374|Homo sapiens ribonuclease III protein.
Length = 1374
Score = 29.1 bits (62), Expect = 8.1
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Frame = +2
Query: 8 HVHNLSCIMQSDKHIPFLMSETTIESIKEMN-AKFLS-GHNITATASGL-NCRLRQTKHR 178
H+ C+M DK I + + + + + + L+ G N + L NC +RQ K+
Sbjct: 869 HIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYG 928
Query: 179 DRRSDHTPLIRR--ETLSHALRRFVLKNESDEPERAN 283
DR+ H + ++ TL + + R L + P R N
Sbjct: 929 DRKVHHMHMRKKGINTLINIMSR--LGQDDPTPSRIN 963
>AF116910-1|AAD29637.1| 541|Homo sapiens putative ribonuclease III
protein.
Length = 541
Score = 29.1 bits (62), Expect = 8.1
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Frame = +2
Query: 8 HVHNLSCIMQSDKHIPFLMSETTIESIKEMN-AKFLS-GHNITATASGL-NCRLRQTKHR 178
H+ C+M DK I + + + + + + L+ G N + L NC +RQ K+
Sbjct: 36 HIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYG 95
Query: 179 DRRSDHTPLIRR--ETLSHALRRFVLKNESDEPERAN 283
DR+ H + ++ TL + + R L + P R N
Sbjct: 96 DRKVHHMHMRKKGINTLINIMSR--LGQDDPTPSRIN 130
>AB209501-1|BAD92738.1| 432|Homo sapiens nuclear RNase III Drosha
variant protein.
Length = 432
Score = 29.1 bits (62), Expect = 8.1
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Frame = +2
Query: 8 HVHNLSCIMQSDKHIPFLMSETTIESIKEMN-AKFLS-GHNITATASGL-NCRLRQTKHR 178
H+ C+M DK I + + + + + + L+ G N + L NC +RQ K+
Sbjct: 320 HIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYG 379
Query: 179 DRRSDHTPLIRR--ETLSHALRRFVLKNESDEPERAN 283
DR+ H + ++ TL + + R L + P R N
Sbjct: 380 DRKVHHMHMRKKGINTLINIMSR--LGQDDPTPSRIN 414
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,153,470
Number of Sequences: 237096
Number of extensions: 1562213
Number of successful extensions: 3626
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3626
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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