Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0076
         (472 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35595-8|CAA84640.1|  540|Caenorhabditis elegans Hypothetical pr...    30   0.96 
Z50028-5|CAA90338.1|  661|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AL032624-4|CAA21522.1|  661|Caenorhabditis elegans Hypothetical ...    28   2.9  
AL032624-1|CAA21521.1|  209|Caenorhabditis elegans Hypothetical ...    28   2.9  
Z93396-6|CAB07715.1|  109|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF304124-1|AAG50237.1|  189|Caenorhabditis elegans 2D42 protein.       28   3.9  
AF016416-3|AAB65276.1|  189|Caenorhabditis elegans Hypothetical ...    28   3.9  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    27   9.0  
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    27   9.0  

>Z35595-8|CAA84640.1|  540|Caenorhabditis elegans Hypothetical
           protein C01G6.7 protein.
          Length = 540

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +3

Query: 252 KMKATSPNGQIPEXWGPKDLSWSKYLASVGKPVNNRDHVIIENFIKPSGKVGNFC---TC 422
           K+K   PN  I + +G  +L+++ +L S G P  +   ++    +K   + G  C     
Sbjct: 321 KLKQLLPNVNIVQGYGMTELTFATHLQSPGSPDGSVGRLVPGTSMKVKKEDGTLCGPHEI 380

Query: 423 CDMTLKGPRQV 455
            ++ +KGP+ +
Sbjct: 381 GELWIKGPQMM 391


>Z50028-5|CAA90338.1|  661|Caenorhabditis elegans Hypothetical
           protein F46F6.1a protein.
          Length = 661

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +3

Query: 108 SFPVITSQPP---HPDLTAGSGKQNIETAEATILHLLDEKHLAMLSDDLYLKMKATSPNG 278
           S P + S+PP   HP +  GS  Q+I  + ++  HLL  +     +    +    ++ N 
Sbjct: 548 SAPPLPSRPPPPLHPRMIPGSSVQSISPSGSSAPHLLHFQQSHQWAQVSQVGSVPSAMNP 607

Query: 279 QIPEXWGPKDLSWSKYLASVG 341
             P+ + P  L   +  ASVG
Sbjct: 608 SAPDWYAPPPLP-PRRPASVG 627


>AL032624-4|CAA21522.1|  661|Caenorhabditis elegans Hypothetical
           protein F46F6.1a protein.
          Length = 661

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +3

Query: 108 SFPVITSQPP---HPDLTAGSGKQNIETAEATILHLLDEKHLAMLSDDLYLKMKATSPNG 278
           S P + S+PP   HP +  GS  Q+I  + ++  HLL  +     +    +    ++ N 
Sbjct: 548 SAPPLPSRPPPPLHPRMIPGSSVQSISPSGSSAPHLLHFQQSHQWAQVSQVGSVPSAMNP 607

Query: 279 QIPEXWGPKDLSWSKYLASVG 341
             P+ + P  L   +  ASVG
Sbjct: 608 SAPDWYAPPPLP-PRRPASVG 627


>AL032624-1|CAA21521.1|  209|Caenorhabditis elegans Hypothetical
           protein F46F6.1b protein.
          Length = 209

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +3

Query: 108 SFPVITSQPP---HPDLTAGSGKQNIETAEATILHLLDEKHLAMLSDDLYLKMKATSPNG 278
           S P + S+PP   HP +  GS  Q+I  + ++  HLL  +     +    +    ++ N 
Sbjct: 96  SAPPLPSRPPPPLHPRMIPGSSVQSISPSGSSAPHLLHFQQSHQWAQVSQVGSVPSAMNP 155

Query: 279 QIPEXWGPKDLSWSKYLASVG 341
             P+ + P  L   +  ASVG
Sbjct: 156 SAPDWYAPPPLP-PRRPASVG 175


>Z93396-6|CAB07715.1|  109|Caenorhabditis elegans Hypothetical
           protein ZC15.8 protein.
          Length = 109

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 299 TKGLELVQVFGQRGQTG*QPRPRY-HRELY*TFRESRQF 412
           T+G    Q +GQ  Q G    PRY  + +Y T +  RQF
Sbjct: 41  TRGYNQQQQYGQTNQFGQTTTPRYTSQSMYGTTQSGRQF 79


>AF304124-1|AAG50237.1|  189|Caenorhabditis elegans 2D42 protein.
          Length = 189

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +2

Query: 92  EMNAKFLSGHNITATASGLNCRLRQTKHRDRRSDHTPLIRRETLSHALRRFVLKNESDEP 271
           E  AK L G  + A       + R+ + ++ R++ T   RR  +    +RF   + +D P
Sbjct: 120 EEMAKSLGGQKLAALDKKSQSK-RERRQQNERNEETTGGRRFNIKDIRKRFAADDVADAP 178

Query: 272 ER 277
           ER
Sbjct: 179 ER 180


>AF016416-3|AAB65276.1|  189|Caenorhabditis elegans Hypothetical
           protein F29A7.6 protein.
          Length = 189

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +2

Query: 92  EMNAKFLSGHNITATASGLNCRLRQTKHRDRRSDHTPLIRRETLSHALRRFVLKNESDEP 271
           E  AK L G  + A       + R+ + ++ R++ T   RR  +    +RF   + +D P
Sbjct: 120 EEMAKSLGGQKLAALDKKSQSK-RERRQQNERNEETTGGRRFNIKDIRKRFAADDVADAP 178

Query: 272 ER 277
           ER
Sbjct: 179 ER 180


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 280  CPFGLVAFIFKYKSSESMAKCFSSNKWSMVASAVSMFCLPEPAV 149
            CP GLV +  K  S     KC +SN+    A  V   C  +P +
Sbjct: 1142 CPEGLVHYGDKCVSEIDATKCLASNQCPSGAQCVKGECRCKPGL 1185


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
           protein 3 protein.
          Length = 3343

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = +3

Query: 198 LHLLDEKHLAMLSDDLYLKMKATSPNGQIP-EXWGPKDLS--WSKYLASVGKPVNNRDHV 368
           +++L  KH+   + + Y+ ++  + +GQ P +    K+L   + KY+ S    V    HV
Sbjct: 391 INILTVKHVENANQEQYI-LEFRANDGQSPADRITRKELKIFFKKYVKSTQIHVERESHV 449

Query: 369 IIENFIKPSGKVGNFCT-CCDM 431
            +E    P   V +  T C DM
Sbjct: 450 TVEKDTVPGSFVAHVETNCTDM 471


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,260,468
Number of Sequences: 27780
Number of extensions: 232896
Number of successful extensions: 702
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)