Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0075
(363 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.13
SPAC27E2.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.17
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.29
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 2.7
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 3.6
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 25 3.6
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 25 4.8
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.13
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -1
Query: 255 VTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATESLSITAGRTS 97
+T + ++ +S SI T +TST T + ++ + S TAT S S + +S
Sbjct: 625 ITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSSTSFASESSS 677
>SPAC27E2.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 81
Score = 29.5 bits (63), Expect = 0.17
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -1
Query: 255 VTVGTAAEAIASDSIATGQTAKT-STGATRDSEVTGAGSGTATESLSITAGRTSGAFVVA 79
VT+ A +A S + T T +T T + T + + T + + SIT +SGAFV+A
Sbjct: 12 VTMALAVQAANSTAPYGNTTNSTGTTNGTNGTNTTTSSTATQSSAASIT-NFSSGAFVIA 70
Query: 78 EI 73
I
Sbjct: 71 MI 72
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.7 bits (61), Expect = 0.29
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = -1
Query: 303 TVSVSVGVLSEDGGLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATES 124
T SV+ ++ S+ V + + S S+AT +ST + + +TG+ S ++ +
Sbjct: 1027 TSSVATASATDSSTSSIAVASVTGSSTS-SVATASATDSSTSSVATASITGSLS-SSIAT 1084
Query: 123 LSITAGRTSGAFVVA 79
S+T TS V+
Sbjct: 1085 ASVTGSPTSSVTAVS 1099
Score = 27.5 bits (58), Expect = 0.68
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -1
Query: 291 SVGVLSEDGGLSVTVGTAAEAIAS-DSIATGQTAKTSTGATRDSEVTGAGSGTATESLSI 115
S+ S G + +V TA+ +S S+AT +ST + + VTG+ S ++ + S
Sbjct: 1003 SIAAASVTGSSTSSVATASVTDSSTSSVATASATDSSTSSIAVASVTGS-STSSVATASA 1061
Query: 114 TAGRTS 97
T TS
Sbjct: 1062 TDSSTS 1067
Score = 27.1 bits (57), Expect = 0.90
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -1
Query: 276 SEDGGLSVTVGTAAEAIAS-DSIATGQTAKTSTGATRDSEVTGAGSGTATESLSITAGRT 100
S G + ++ TA+ + +S S+AT +ST + + VTG+ S ++ + S+T T
Sbjct: 969 SATGSSTSSIATASVSGSSTSSVATASATDSSTSSIAAASVTGS-STSSVATASVTDSST 1027
Query: 99 S 97
S
Sbjct: 1028 S 1028
Score = 24.6 bits (51), Expect = 4.8
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = -1
Query: 303 TVSVSVGVLSEDGGLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATES 124
T SV+ ++ SV + +++S SIAT + T + T + GTA+ +
Sbjct: 1053 TSSVATASATDSSTSSVATASITGSLSS-SIATASVTGSPTSSVTAVSSTSSVEGTASST 1111
Query: 123 LSITA 109
++ A
Sbjct: 1112 IAAAA 1116
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.4 bits (53), Expect = 2.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 157 DRSRLRYCDRITIYYSRQNFRSICSRGNL 71
D+S LRY D I ++ +Q +R++ S L
Sbjct: 36 DKSALRYIDAILDHHLKQIYRNLTSNSPL 64
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.0 bits (52), Expect = 3.6
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 222 SDSIATGQTAKTSTGATRDSEVTGAGSGTATESLSITAGRTS 97
S+ + T ++ AT + TGAG+G + S +T +T+
Sbjct: 174 SNQSTSNSTRNGTSAATSNGTGTGAGTGASHRSSPVTNRQTN 215
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 25.0 bits (52), Expect = 3.6
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 303 TVSVSVGVLSEDGGLSVTVGTAAEAIASDS 214
T+S SV VLS+DG S + GT ++ S S
Sbjct: 288 TLSQSVLVLSKDGNASSSGGTENQSANSSS 317
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 24.6 bits (51), Expect = 4.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 10 VN*RCNSNCTYRNNG*RNSITNFRDYK 90
VN CN+NC + +G R + RD K
Sbjct: 185 VNHDCNANCRFNTSGKRIWLRCVRDIK 211
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 957,293
Number of Sequences: 5004
Number of extensions: 14482
Number of successful extensions: 42
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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