Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0075
(363 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0288 - 27549718-27549940,27550025-27550102,27550282-275506... 33 0.091
12_02_1191 + 26826884-26827345 31 0.21
10_08_0119 - 14952786-14953931,14954709-14954831 31 0.28
11_06_0503 - 24374657-24375211 30 0.64
01_07_0037 + 40657449-40658010,40658567-40658901 30 0.64
09_03_0099 + 12353777-12353877,12354022-12354220,12354720-123548... 29 0.85
06_01_0393 + 2831676-2831876,2831986-2832101,2832340-2832421,283... 29 0.85
02_05_0310 + 27769988-27770830 29 0.85
04_03_0832 + 20139299-20139520,20139822-20141114,20142697-201428... 29 1.1
04_03_0098 + 11183039-11183752 29 1.1
02_02_0280 - 8515894-8517309 29 1.1
02_01_0616 + 4616936-4617307,4618723-4618809,4619322-4619384,461... 29 1.1
05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069 29 1.5
03_05_0263 + 22503943-22506240 29 1.5
01_06_1226 - 35518981-35519295,35519876-35520745 28 2.0
06_03_0854 + 25400855-25403741,25406174-25407708 28 2.6
10_02_0050 - 4596444-4596634,4596855-4597107 27 3.4
05_03_0045 + 7752571-7752599,7754013-7754078,7754228-7754228,775... 27 4.5
04_04_0701 + 27373057-27374013 27 4.5
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451... 27 4.5
11_06_0447 - 23710477-23710668,23711547-23712026 27 6.0
09_04_0182 + 15376025-15376498 27 6.0
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 27 6.0
02_04_0077 - 19491844-19492154,19492456-19492531,19492841-19492852 27 6.0
02_03_0342 + 17959432-17959623,17959808-17959903 27 6.0
02_04_0352 + 22278514-22278721,22278871-22279136,22279228-22279833 26 7.9
>02_05_0288 -
27549718-27549940,27550025-27550102,27550282-27550674,
27550752-27551347,27552232-27552978
Length = 678
Score = 32.7 bits (71), Expect = 0.091
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = -1
Query: 306 CTVSVSVGVLSEDGGLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATE 127
C+ S +G G S + ++ ++A+ T T T+ ATR + T AG G A +
Sbjct: 33 CSASYFLGAWQHGGFSSPSASPSSVSVATAVACTTTTTATTRSATRPRKRTPAGQGQALD 92
Query: 126 SLSITAGRTSGA 91
+ A GA
Sbjct: 93 FSAHHAAAADGA 104
>12_02_1191 + 26826884-26827345
Length = 153
Score = 31.5 bits (68), Expect = 0.21
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -1
Query: 249 VGTAAEAIASDSIATGQTA-KTSTGATRDSEVTGAGSGT-ATESLSITAGRTSGAFV 85
VG AAEA+ +D +AT + A + + A R++ G G G E+++ A G V
Sbjct: 97 VGGAAEALPADMVATREDADRVAAAAARNAARRGGGGGKGVAEAVAAAAEMNEGRMV 153
>10_08_0119 - 14952786-14953931,14954709-14954831
Length = 422
Score = 31.1 bits (67), Expect = 0.28
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = -1
Query: 291 SVGVLSEDGGLSVTVGTAAEAIASD-SIATGQTAKTSTGATRDSEVTGAGSGTATESLSI 115
S G L G SV V +A SD + G T T+ A + G G + + +I
Sbjct: 26 SCGGLDVYGQASVEVEASAPTSPSDVGLDAGMTTTTTAAAAALTSSVGDGPPPSRSTTTI 85
Query: 114 TAGRT 100
TAGRT
Sbjct: 86 TAGRT 90
>11_06_0503 - 24374657-24375211
Length = 184
Score = 29.9 bits (64), Expect = 0.64
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 68 SQISATTNAP-EVLPAVIDSDSVAVPEPAPVTSESLVAPV 184
SQI +TT P + P+ SD +P PAPVTS+ APV
Sbjct: 12 SQIPSTTMDPSDEAPSGKKSDG-QIPAPAPVTSDEGKAPV 50
>01_07_0037 + 40657449-40658010,40658567-40658901
Length = 298
Score = 29.9 bits (64), Expect = 0.64
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 261 LSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVT-GAGSGTATESLSITAGRTS 97
+S TV ASD +T Q G +DSE T GAG G + + TA T+
Sbjct: 186 ISATVSAKRGGAASDKNSTSQHDGGGGGGLKDSEATYGAGVGGEEGTTTATATATT 241
>09_03_0099 +
12353777-12353877,12354022-12354220,12354720-12354845,
12354935-12355093,12356286-12356415,12356551-12356592,
12357507-12357806,12357933-12357984,12358157-12358234,
12359133-12359229
Length = 427
Score = 29.5 bits (63), Expect = 0.85
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 183 TGATRDSEVTGAGSGTATESLSITAGRTSGA 91
T RDS+ GSG+ E +S A TSGA
Sbjct: 321 TDVKRDSDANAVGSGSNPEQVSHDANETSGA 351
>06_01_0393 +
2831676-2831876,2831986-2832101,2832340-2832421,
2832515-2832671,2832755-2832848,2833942-2834008,
2834464-2835009
Length = 420
Score = 29.5 bits (63), Expect = 0.85
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = -1
Query: 291 SVGVLSEDGGLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATESLSIT 112
S+ + +E S A A+A G+ + T+T T ++ + TE LSI
Sbjct: 265 SMTIPAEAASSSSAFACAVAALAEQQQMYGEASSTATCHTSRCDILSRSDRSFTEDLSIN 324
Query: 111 AGRTSGA 91
+SGA
Sbjct: 325 GSGSSGA 331
>02_05_0310 + 27769988-27770830
Length = 280
Score = 29.5 bits (63), Expect = 0.85
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -1
Query: 300 VSVSVGVLSEDGGLSVTVGTAAEAIASDSIATGQTAKTSTGAT-RDSEVTGAGSGTATES 124
+S V G T+G + S S++ ST AT R S T T T++
Sbjct: 1 MSPGVSAKKRHAGAGFTLGCGCKDAKSVSVSASAAGTPSTTATRRRSAGTNPSGSTTTDT 60
Query: 123 LSITAGRTS 97
L++T+ +S
Sbjct: 61 LTMTSASSS 69
>04_03_0832 +
20139299-20139520,20139822-20141114,20142697-20142822,
20143322-20143442,20144213-20144481
Length = 676
Score = 29.1 bits (62), Expect = 1.1
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = -1
Query: 243 TAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATESLSITAGRTSGAFVVA 79
TA+ A AS S +T A S+GA R+ AG G SLS S + +A
Sbjct: 129 TASSANASTSSSTA--ASGSSGARRNGAAAAAGEGWGRSSLSTATINLSQEYTLA 181
>04_03_0098 + 11183039-11183752
Length = 237
Score = 29.1 bits (62), Expect = 1.1
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -1
Query: 288 VGVLSEDGGLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATESLSITA 109
VG+ GG++VT G A + TG + ++ TG GSG+A
Sbjct: 150 VGIHIGPGGVTVTHGGGGGAGGGSGGGGASGGGSGTGRSGNAVGTGQGSGSANGGTGSGG 209
Query: 108 GRTSGA 91
G SG+
Sbjct: 210 GSGSGS 215
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -1
Query: 267 GGLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATESLSITAGRTSG 94
GG + G + + +++ TGQ + ++ G T +G+GSG + G SG
Sbjct: 174 GGGGASGGGSGTGRSGNAVGTGQGSGSANGGTGSGGGSGSGSGQGGSAGGGGGGAGSG 231
>02_02_0280 - 8515894-8517309
Length = 471
Score = 29.1 bits (62), Expect = 1.1
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -1
Query: 252 TVGTAAEAIASDSIATGQTAK--TSTGATRDSEVTGAGSGTATESLSITAGRTSGAFVVA 79
T GTAAE +++TG TA A + +VT + TA E A + A V A
Sbjct: 208 TGGTAAEKTKDVALSTGGTASEYAKQAAVKGKDVTLSAGETAAEHAKAAAEKARDAAVAA 267
>02_01_0616 +
4616936-4617307,4618723-4618809,4619322-4619384,
4619478-4619537,4619570-4619602,4621584-4621751
Length = 260
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = -1
Query: 231 AIASDSIATGQTAKTSTGATRD-SEVTGAGSGTATESLSITAGRTSGAF 88
A+A+ + G+ A+ S + D S +G+GSG+ + S + T+G GAF
Sbjct: 62 AVAAAAGKKGRWARASPASPLDYSGGSGSGSGSGSGSAASTSGGEDGAF 110
>05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069
Length = 228
Score = 28.7 bits (61), Expect = 1.5
Identities = 23/71 (32%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Frame = -1
Query: 300 VSVSVGVLSEDG-GLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATES 124
V +G + G G V G A TG T TG T TGAG+GT +
Sbjct: 111 VGTGMGTGTSTGTGTGVGTGGTGTGGAGVGAGTGTGVGTGTG-TGAGMGTGAGAGTGITT 169
Query: 123 LSITAGRTSGA 91
T G GA
Sbjct: 170 PGSTTGTQGGA 180
>03_05_0263 + 22503943-22506240
Length = 765
Score = 28.7 bits (61), Expect = 1.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 267 GGLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATES 124
G LS+++G A A DS+A G A AG GT+T S
Sbjct: 270 GVLSLSLGGGAADYARDSVAIGAFAAMEQNVLVSCSAGNAGPGTSTLS 317
>01_06_1226 - 35518981-35519295,35519876-35520745
Length = 394
Score = 28.3 bits (60), Expect = 2.0
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -1
Query: 276 SEDGGLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATESLSIT 112
+ DG L VT+G A+ ++ G+ K A S GAG G + LS+T
Sbjct: 276 ARDGALLVTIGNIAQVWSN-----GKLKKVRGMARPVSSAPGAGHGAEADRLSVT 325
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 80 ATTNAPEVLPAVIDSDSVAVPEPAPVTSESLVAPV 184
A+ AP V P +++ VP P P + + APV
Sbjct: 1281 ASAAAPAVAPPTAVPEAILVPMPPPAVAAAAAAPV 1315
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 77 SATTNAPEVLPAVIDSDSVAVPEPAPVTSESLVAPV 184
+A AP V P +++ +P P P + + APV
Sbjct: 652 AAAAAAPAVAPPAAALEAILIPMPPPAAAAAAAAPV 687
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 92 APEVLPAVIDSDSVAVPEPAPVTSESLVAPVEVLA 196
+P ++ + S A P PAP S++ PV+V A
Sbjct: 271 SPVIVQVPVPPSSDAAPVPAPTLSDASPVPVQVPA 305
>10_02_0050 - 4596444-4596634,4596855-4597107
Length = 147
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -1
Query: 165 SEVTGAGSGTATESLSITAGRTSG 94
+E G GSG+ +++++ AGR+SG
Sbjct: 21 AEDVGVGSGSGEDAVAVRAGRSSG 44
>05_03_0045 +
7752571-7752599,7754013-7754078,7754228-7754228,
7757535-7758380
Length = 313
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 83 TTNAPEVLPAVIDSDSVAVPEPAPVTSES 169
TTN P V P + + V PAPV S
Sbjct: 240 TTNTPPVQPTAVVQPTAVVSVPAPVAPSS 268
>04_04_0701 + 27373057-27374013
Length = 318
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/47 (23%), Positives = 28/47 (59%)
Frame = -1
Query: 249 VGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATESLSITA 109
+G A +A+ +++ + ++ + + +RD+ T + +GT+T S T+
Sbjct: 234 IGVANKAVKTEAPTSAYSSSSLSSMSRDTTATTSSAGTSTGSSEPTS 280
>02_04_0121 -
19943988-19944251,19944534-19944734,19944802-19945124,
19945283-19945316,19945479-19945856,19946425-19946678,
19946791-19946938,19947052-19947198,19947287-19947664
Length = 708
Score = 27.1 bits (57), Expect = 4.5
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 291 SVGVLSEDGGLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATE 127
S G+ S GL + TAA + AS S + A+ + A+ + G G G E
Sbjct: 34 SRGLSSVSFGLPRSTTTAARSTASPSAPSAAAAEATDAASAQAGSDGKGDGIGEE 88
>11_06_0447 - 23710477-23710668,23711547-23712026
Length = 223
Score = 26.6 bits (56), Expect = 6.0
Identities = 18/61 (29%), Positives = 22/61 (36%)
Frame = -1
Query: 267 GGLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATESLSITAGRTSGAF 88
GG +V +G A A + G A AT EV G G+ S AF
Sbjct: 62 GGGAVVLGGGASAAGAGLPGGGGAAVPGVDATGGEEVAGGGASVPGGGAGPLGSGASAAF 121
Query: 87 V 85
V
Sbjct: 122 V 122
>09_04_0182 + 15376025-15376498
Length = 157
Score = 26.6 bits (56), Expect = 6.0
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = -1
Query: 300 VSVSVGVLSEDGGLSVT-VGTAAEAIASDSIATG-QTAKTSTGATRDSEVTGAGS--GTA 133
V V VGV GG+SV+ G+ + + A +G ++ S G S + AGS G+
Sbjct: 60 VGVGVGVGLGPGGVSVSGSGSGSGSAAGVGSTSGSRSGSVSVGGASSSAGSSAGSSAGSG 119
Query: 132 TESLSITAGRTSGA 91
+AG ++G+
Sbjct: 120 GSRTGSSAGSSAGS 133
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -1
Query: 246 GTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATESLS 118
GT + A S T TA++++G+ + VTGA SG+ + + S
Sbjct: 377 GTMSGIDAPSSTGTSSTAESNSGSA--TSVTGANSGSYSSAWS 417
>02_04_0077 - 19491844-19492154,19492456-19492531,19492841-19492852
Length = 132
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 68 SQISATTNAPEVLPAVIDSDSVAVPEPAPVTSES 169
S+ T+ E A DS + A P PAP T+E+
Sbjct: 59 SKTGKKTSFWEAAEAASDSAAAAAPAPAPATAEA 92
>02_03_0342 + 17959432-17959623,17959808-17959903
Length = 95
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 204 GQTAKTSTGATRDSEVTGAGSGTATESLSITAGRTSGAFVVAE 76
G+ A + G VTGAG G ATE A +G + +E
Sbjct: 16 GRMAAGAGGGFAGGGVTGAGGGVATEERQPAASGRAGLRLYSE 58
>02_04_0352 + 22278514-22278721,22278871-22279136,22279228-22279833
Length = 359
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 162 EVTGAGSGTATESLSITAG 106
+V+G G G T SLS TAG
Sbjct: 218 DVSGGGGGAGTTSLSATAG 236
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,528,266
Number of Sequences: 37544
Number of extensions: 104863
Number of successful extensions: 511
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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