Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0072
         (360 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1PWC3 Cluster: Similar to capsular polysaccharide synt...    31   4.6  
UniRef50_Q2Q1H2 Cluster: NADH dehydrogenase subunit 6; n=1; Time...    31   6.1  
UniRef50_Q8HCU2 Cluster: NADH dehydrogenase subunit 6; n=2; Trio...    31   8.0  

>UniRef50_Q1PWC3 Cluster: Similar to capsular polysaccharide
           synthesis protein; n=1; Candidatus Kuenenia
           stuttgartiensis|Rep: Similar to capsular polysaccharide
           synthesis protein - Candidatus Kuenenia stuttgartiensis
          Length = 467

 Score = 31.5 bits (68), Expect = 4.6
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +2

Query: 89  FSYILFLIFLAWIISIIYLCF 151
           FS ++FL F  WIISI++LCF
Sbjct: 109 FSRVIFLFF--WIISIVFLCF 127


>UniRef50_Q2Q1H2 Cluster: NADH dehydrogenase subunit 6; n=1; Timema
           californicum|Rep: NADH dehydrogenase subunit 6 - Timema
           californicum (California timema)
          Length = 166

 Score = 31.1 bits (67), Expect = 6.1
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +3

Query: 123 GLLVLFIYVSRIASNE 170
           G+LVLFIYVS IASNE
Sbjct: 60  GMLVLFIYVSSIASNE 75


>UniRef50_Q8HCU2 Cluster: NADH dehydrogenase subunit 6; n=2;
           Triops|Rep: NADH dehydrogenase subunit 6 - Triops
           cancriformis (Tadpole shrimp)
          Length = 166

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +3

Query: 123 GLLVLFIYVSRIASNE 170
           GLLVLFIY+S +ASNE
Sbjct: 61  GLLVLFIYISSLASNE 76


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,205,003
Number of Sequences: 1657284
Number of extensions: 798641
Number of successful extensions: 2542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2542
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 12367962079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)