Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0072
         (360 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              23   1.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          20   7.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      20   7.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   7.7  

>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 279 NNSEINKLFTKILXFNDENKH 341
           N +EIN+L T+    +D N H
Sbjct: 93  NENEINQLITECSAISDTNVH 113


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 301 YLQKYYXLMMK 333
           YLQKY+ L M+
Sbjct: 534 YLQKYFYLFME 544


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 301 YLQKYYXLMMK 333
           YLQKY+ L M+
Sbjct: 534 YLQKYFYLFME 544


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 276 ENNSEINKLFTK 311
           ENNSE++K  TK
Sbjct: 386 ENNSEVSKSRTK 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,405
Number of Sequences: 438
Number of extensions: 307
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)