Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0070
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.15 |tfb5||transcription factor TFIIH complex subunit T...    42   9e-05
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    26   4.5  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   6.0  
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    25   6.0  

>SPBC32F12.15 |tfb5||transcription factor TFIIH complex subunit Tfb5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 68

 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 20/71 (28%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
 Frame = +2

Query: 74  MVNVMKGVL-VECDPAMKQFLLHLDETLALGRKFILQDLDETHLFISADIVETLQARVDD 250
           M    KG+L VECDP +KQ +L++DE        +++++DE  L ++   +E ++A ++ 
Sbjct: 1   MPRAQKGLLLVECDPTVKQLILNMDEQ---SPGIVIEEIDEERLLVNESRLEQVKAELER 57

Query: 251 LMDQLSIPVHD 283
            +++ +  V +
Sbjct: 58  RLEENTYQVEE 68


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 573 SCANVFRNRIL*YSALLDFFFLVGFSLESANFGTFFDITKSACGSS 436
           SC +V  N    Y+  LDF+  +GF  + A+FGT        C  S
Sbjct: 10  SCYSVVANTEDTYNQTLDFYQKLGFK-KVASFGTSDSDNARVCNES 54


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = -2

Query: 516 FFLVGFSLESANFGTFFDITKSACGSS*KLSCSRASTAFLARRFLATSSKTFLLSASLTL 337
           F++VG    S+  G+ F    +   S      + AST+  +     T++ T   SA+ + 
Sbjct: 111 FYIVGGEGISSTTGSTFQSMTTFTSSQTNSGHASASTSIPSTAITVTANSTIYSSATSSF 170

Query: 336 PDSREV 319
           P S +V
Sbjct: 171 PYSTDV 176


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 122 KQFLLHLDETLALGRKFILQDLDETHLFISADIVETLQARVD 247
           KQF    D    +     LQD DE   F + DI ++ +A+ D
Sbjct: 303 KQFFTRSDLENRIWTAPFLQDSDEIRFFENIDIFDSTKAKQD 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,678
Number of Sequences: 5004
Number of extensions: 47274
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)