Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0070
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0984 - 23131468-23131679,23132082-23132209,23132300-231323...    54   1e-07
12_01_0202 - 1513835-1514282,1514506-1514571,1515420-1515508,151...    28   6.1  
06_03_0312 - 19471670-19471874,19472608-19472807                       27   8.1  

>07_03_0984 -
           23131468-23131679,23132082-23132209,23132300-23132365,
           23134421-23134515,23135292-23135340,23135428-23135487,
           23135580-23135701,23135799-23135840,23135944-23135992,
           23136095-23136166,23136638-23136738,23136835-23136910,
           23137002-23137081,23137196-23137307,23137391-23137454,
           23137540-23137603,23138544-23138570
          Length = 472

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 21/55 (38%), Positives = 36/55 (65%)
 Frame = +2

Query: 74  MVNVMKGVLVECDPAMKQFLLHLDETLALGRKFILQDLDETHLFISADIVETLQA 238
           MVN +KG+ + CD  M QF+++L+ ++    KFIL  LD TH+F+   + E +++
Sbjct: 349 MVNAIKGLFISCDVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEMIRS 403


>12_01_0202 -
           1513835-1514282,1514506-1514571,1515420-1515508,
           1518011-1518352
          Length = 314

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 258 SIKSSTRACRVSTISADMNKCVSSRS*RINFLP 160
           S  + T ACR S +SAD     SS +    FLP
Sbjct: 43  SFTTPTDACRCSAVSADFQAAASSNAVWERFLP 75


>06_03_0312 - 19471670-19471874,19472608-19472807
          Length = 134

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 200 LFISADIVETLQARVDDLMDQLSIPVHD 283
           LF+  D+  T++  +DD++D+L  PV D
Sbjct: 6   LFVKLDVTNTIEHGLDDIVDRLP-PVRD 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,629,274
Number of Sequences: 37544
Number of extensions: 281306
Number of successful extensions: 636
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)