Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0070
(577 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC060317-1|AAH60317.1| 71|Homo sapiens general transcription f... 102 1e-21
BC056906-1|AAH56906.1| 71|Homo sapiens general transcription f... 102 1e-21
AL590703-3|CAH70241.1| 71|Homo sapiens protein ( Human DNA seq... 102 1e-21
AJ634743-1|CAG25512.1| 71|Homo sapiens TFIIH basal transcripti... 102 1e-21
U61837-1|AAB88578.1| 154|Homo sapiens putative cyclin G1 intera... 50 4e-06
CR456992-1|CAG33273.1| 154|Homo sapiens ZNHIT1 protein. 50 4e-06
BC017333-1|AAH17333.1| 154|Homo sapiens zinc finger, HIT type 1... 50 4e-06
AF093571-1|AAF03558.1| 154|Homo sapiens cyclin G1 binding prote... 50 4e-06
AC004876-6|AAD45833.1| 154|Homo sapiens putative cyclin G1 inte... 50 4e-06
BC101789-1|AAI01790.1| 366|Homo sapiens apolipoprotein A-V prot... 29 8.9
BC101787-1|AAI01788.1| 366|Homo sapiens apolipoprotein AV protein. 29 8.9
AY555191-1|AAS68229.1| 366|Homo sapiens apolipoprotein A-V prot... 29 8.9
AY422949-1|AAQ91808.1| 366|Homo sapiens apolipoprotein A-V prot... 29 8.9
AF202890-1|AAF25662.1| 363|Homo sapiens apolipoprotein A5 protein. 29 8.9
AF202889-1|AAF25661.1| 363|Homo sapiens apolipoprotein A5 protein. 29 8.9
>BC060317-1|AAH60317.1| 71|Homo sapiens general transcription
factor IIH, polypeptide 5 protein.
Length = 71
Score = 102 bits (244), Expect = 1e-21
Identities = 45/71 (63%), Positives = 60/71 (84%)
Frame = +2
Query: 74 MVNVMKGVLVECDPAMKQFLLHLDETLALGRKFILQDLDETHLFISADIVETLQARVDDL 253
MVNV+KGVL+ECDPAMKQFLL+LDE+ ALG+KFI+QD+D+TH+F+ A++V LQ RV +L
Sbjct: 1 MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60
Query: 254 MDQLSIPVHDK 286
MDQ + + K
Sbjct: 61 MDQNAFSLTQK 71
>BC056906-1|AAH56906.1| 71|Homo sapiens general transcription
factor IIH, polypeptide 5 protein.
Length = 71
Score = 102 bits (244), Expect = 1e-21
Identities = 45/71 (63%), Positives = 60/71 (84%)
Frame = +2
Query: 74 MVNVMKGVLVECDPAMKQFLLHLDETLALGRKFILQDLDETHLFISADIVETLQARVDDL 253
MVNV+KGVL+ECDPAMKQFLL+LDE+ ALG+KFI+QD+D+TH+F+ A++V LQ RV +L
Sbjct: 1 MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60
Query: 254 MDQLSIPVHDK 286
MDQ + + K
Sbjct: 61 MDQNAFSLTQK 71
>AL590703-3|CAH70241.1| 71|Homo sapiens protein ( Human DNA
sequence from clone RP11-120J8 on chromosome 6 Contains
the 5' end of the gene for hypothetical protein
FLJ14917, a novel ).
Length = 71
Score = 102 bits (244), Expect = 1e-21
Identities = 45/71 (63%), Positives = 60/71 (84%)
Frame = +2
Query: 74 MVNVMKGVLVECDPAMKQFLLHLDETLALGRKFILQDLDETHLFISADIVETLQARVDDL 253
MVNV+KGVL+ECDPAMKQFLL+LDE+ ALG+KFI+QD+D+TH+F+ A++V LQ RV +L
Sbjct: 1 MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60
Query: 254 MDQLSIPVHDK 286
MDQ + + K
Sbjct: 61 MDQNAFSLTQK 71
>AJ634743-1|CAG25512.1| 71|Homo sapiens TFIIH basal transcription
factor complex TTDA subunit protein.
Length = 71
Score = 102 bits (244), Expect = 1e-21
Identities = 45/71 (63%), Positives = 60/71 (84%)
Frame = +2
Query: 74 MVNVMKGVLVECDPAMKQFLLHLDETLALGRKFILQDLDETHLFISADIVETLQARVDDL 253
MVNV+KGVL+ECDPAMKQFLL+LDE+ ALG+KFI+QD+D+TH+F+ A++V LQ RV +L
Sbjct: 1 MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60
Query: 254 MDQLSIPVHDK 286
MDQ + + K
Sbjct: 61 MDQNAFSLTQK 71
>U61837-1|AAB88578.1| 154|Homo sapiens putative cyclin G1
interacting protein protein.
Length = 154
Score = 50.4 bits (115), Expect = 4e-06
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +2
Query: 326 RESGRVKDAERRKVXXXXXXXXXXXXXXXXXXQDNFHEDPHADL-VMSKKVPKFADSNEK 502
+ S R +D +R+V DNF +DPHA L + K++P+F D +
Sbjct: 5 KTSVRSQDPGQRRVLDRAARQRRINRQLEALENDNFQDDPHAGLPQLGKRLPQFDDDADT 64
Query: 503 PTRKKKSKSAEYYKMRFRKTFAQLV 577
+KKK++ +++K+RFRK F L+
Sbjct: 65 GKKKKKTR-GDHFKLRFRKNFQALL 88
>CR456992-1|CAG33273.1| 154|Homo sapiens ZNHIT1 protein.
Length = 154
Score = 50.4 bits (115), Expect = 4e-06
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +2
Query: 326 RESGRVKDAERRKVXXXXXXXXXXXXXXXXXXQDNFHEDPHADL-VMSKKVPKFADSNEK 502
+ S R +D +R+V DNF +DPHA L + K++P+F D +
Sbjct: 5 KTSVRSQDPGQRRVLDRAARQRRINRQLEALENDNFQDDPHAGLPQLGKRLPQFDDDADT 64
Query: 503 PTRKKKSKSAEYYKMRFRKTFAQLV 577
+KKK++ +++K+RFRK F L+
Sbjct: 65 GKKKKKTR-GDHFKLRFRKNFQALL 88
>BC017333-1|AAH17333.1| 154|Homo sapiens zinc finger, HIT type 1
protein.
Length = 154
Score = 50.4 bits (115), Expect = 4e-06
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +2
Query: 326 RESGRVKDAERRKVXXXXXXXXXXXXXXXXXXQDNFHEDPHADL-VMSKKVPKFADSNEK 502
+ S R +D +R+V DNF +DPHA L + K++P+F D +
Sbjct: 5 KTSVRSQDPGQRRVLDRAARQRRINRQLEALENDNFQDDPHAGLPQLGKRLPQFDDDADT 64
Query: 503 PTRKKKSKSAEYYKMRFRKTFAQLV 577
+KKK++ +++K+RFRK F L+
Sbjct: 65 GKKKKKTR-GDHFKLRFRKNFQALL 88
>AF093571-1|AAF03558.1| 154|Homo sapiens cyclin G1 binding protein
1 protein.
Length = 154
Score = 50.4 bits (115), Expect = 4e-06
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +2
Query: 326 RESGRVKDAERRKVXXXXXXXXXXXXXXXXXXQDNFHEDPHADL-VMSKKVPKFADSNEK 502
+ S R +D +R+V DNF +DPHA L + K++P+F D +
Sbjct: 5 KTSVRSQDPGQRRVLDRAARQRRINRQLEALENDNFQDDPHAGLPQLGKRLPQFDDDADT 64
Query: 503 PTRKKKSKSAEYYKMRFRKTFAQLV 577
+KKK++ +++K+RFRK F L+
Sbjct: 65 GKKKKKTR-GDHFKLRFRKNFQALL 88
>AC004876-6|AAD45833.1| 154|Homo sapiens putative cyclin G1
interacting protein protein.
Length = 154
Score = 50.4 bits (115), Expect = 4e-06
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +2
Query: 326 RESGRVKDAERRKVXXXXXXXXXXXXXXXXXXQDNFHEDPHADL-VMSKKVPKFADSNEK 502
+ S R +D +R+V DNF +DPHA L + K++P+F D +
Sbjct: 5 KTSVRSQDPGQRRVLDRAARQRRINRQLEALENDNFQDDPHAGLPQLGKRLPQFDDDADT 64
Query: 503 PTRKKKSKSAEYYKMRFRKTFAQLV 577
+KKK++ +++K+RFRK F L+
Sbjct: 65 GKKKKKTR-GDHFKLRFRKNFQALL 88
>BC101789-1|AAI01790.1| 366|Homo sapiens apolipoprotein A-V
protein.
Length = 366
Score = 29.5 bits (63), Expect = 8.9
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 209 SADIVETLQARVDDLMDQLSIPVHDKG 289
S ++ LQAR+DDL + ++ +HD+G
Sbjct: 333 SGKVLSKLQARLDDLWEDITHSLHDQG 359
>BC101787-1|AAI01788.1| 366|Homo sapiens apolipoprotein AV protein.
Length = 366
Score = 29.5 bits (63), Expect = 8.9
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 209 SADIVETLQARVDDLMDQLSIPVHDKG 289
S ++ LQAR+DDL + ++ +HD+G
Sbjct: 333 SGKVLSKLQARLDDLWEDITHSLHDQG 359
>AY555191-1|AAS68229.1| 366|Homo sapiens apolipoprotein A-V
protein.
Length = 366
Score = 29.5 bits (63), Expect = 8.9
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 209 SADIVETLQARVDDLMDQLSIPVHDKG 289
S ++ LQAR+DDL + ++ +HD+G
Sbjct: 333 SGKVLSKLQARLDDLWEDITHSLHDQG 359
>AY422949-1|AAQ91808.1| 366|Homo sapiens apolipoprotein A-V
protein.
Length = 366
Score = 29.5 bits (63), Expect = 8.9
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 209 SADIVETLQARVDDLMDQLSIPVHDKG 289
S ++ LQAR+DDL + ++ +HD+G
Sbjct: 333 SGKVLSKLQARLDDLWEDITHSLHDQG 359
>AF202890-1|AAF25662.1| 363|Homo sapiens apolipoprotein A5 protein.
Length = 363
Score = 29.5 bits (63), Expect = 8.9
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 209 SADIVETLQARVDDLMDQLSIPVHDKG 289
S ++ LQAR+DDL + ++ +HD+G
Sbjct: 330 SGKVLSKLQARLDDLWEDITHSLHDQG 356
>AF202889-1|AAF25661.1| 363|Homo sapiens apolipoprotein A5 protein.
Length = 363
Score = 29.5 bits (63), Expect = 8.9
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 209 SADIVETLQARVDDLMDQLSIPVHDKG 289
S ++ LQAR+DDL + ++ +HD+G
Sbjct: 330 SGKVLSKLQARLDDLWEDITHSLHDQG 356
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,102,597
Number of Sequences: 237096
Number of extensions: 1643432
Number of successful extensions: 2977
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2972
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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