Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0070
         (577 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071441-1|AAL49063.1|  151|Drosophila melanogaster RE52596p pro...    89   5e-18
AE014134-841|AAF52201.2|  151|Drosophila melanogaster CG31917-PA...    89   5e-18
AY226551-1|AAO47377.1|  476|Drosophila melanogaster pickpocket 2...    29   3.4  
AY226550-1|AAO47376.1|  502|Drosophila melanogaster pickpocket 2...    29   3.4  
AY118931-1|AAM50791.1|  237|Drosophila melanogaster LD24239p pro...    29   3.4  
AE014298-2578|AAX52503.1|  502|Drosophila melanogaster CG8527-PB...    29   3.4  
AE014298-2577|AAF48734.2|  477|Drosophila melanogaster CG8527-PA...    29   3.4  
AE014298-1227|AAF46411.1|  237|Drosophila melanogaster CG1789-PA...    29   3.4  
AE014297-3047|AAN13884.1|  401|Drosophila melanogaster CG31336-P...    29   4.5  

>AY071441-1|AAL49063.1|  151|Drosophila melanogaster RE52596p
           protein.
          Length = 151

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 43/88 (48%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
 Frame = +2

Query: 317 MTSRESGRVKDAERRKVXXXXXXXXXXXXXXXXXXQDNFHEDPHADLVMSKKVPKFADSN 496
           MT RES R+KDAE+++V                  QDN+H+DPHADLVMSKK+PKF DS 
Sbjct: 1   MTGRESNRIKDAEKKRVLDSTARQRRARKALEALEQDNYHDDPHADLVMSKKLPKFQDSL 60

Query: 497 EKPTRKK-KSKSAEYYKMRFRKTFAQLV 577
           +    KK K K AEY+ +++RK F QL+
Sbjct: 61  KTGKEKKGKRKGAEYFLVKYRKNFQQLL 88


>AE014134-841|AAF52201.2|  151|Drosophila melanogaster CG31917-PA
           protein.
          Length = 151

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 43/88 (48%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
 Frame = +2

Query: 317 MTSRESGRVKDAERRKVXXXXXXXXXXXXXXXXXXQDNFHEDPHADLVMSKKVPKFADSN 496
           MT RES R+KDAE+++V                  QDN+H+DPHADLVMSKK+PKF DS 
Sbjct: 1   MTGRESNRIKDAEKKRVLDSTARQRRARKALEALEQDNYHDDPHADLVMSKKLPKFQDSL 60

Query: 497 EKPTRKK-KSKSAEYYKMRFRKTFAQLV 577
           +    KK K K AEY+ +++RK F QL+
Sbjct: 61  KTGKEKKGKRKGAEYFLVKYRKNFQQLL 88


>AY226551-1|AAO47377.1|  476|Drosophila melanogaster pickpocket 23
           short form protein.
          Length = 476

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 219 ISADMNKCVSSRS*RINFLPSARVSSKCSKNC 124
           +S    KC+ S   ++N+ P A   S C K C
Sbjct: 297 LSIGQRKCIFSDEVKLNYFPDAYTFSSCMKQC 328


>AY226550-1|AAO47376.1|  502|Drosophila melanogaster pickpocket 23
           long form protein.
          Length = 502

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 219 ISADMNKCVSSRS*RINFLPSARVSSKCSKNC 124
           +S    KC+ S   ++N+ P A   S C K C
Sbjct: 297 LSIGQRKCIFSDEVKLNYFPDAYTFSSCMKQC 328


>AY118931-1|AAM50791.1|  237|Drosophila melanogaster LD24239p
           protein.
          Length = 237

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 431 FHEDPHADLVMSKKVPKFADSNEKPTRKKKSKSAE 535
           F ED + +L M + + K  D  E+  +KKKSK+ E
Sbjct: 138 FDEDGYMELDMGEWLLKHDDEEEEEEKKKKSKTTE 172


>AE014298-2578|AAX52503.1|  502|Drosophila melanogaster CG8527-PB,
           isoform B protein.
          Length = 502

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 219 ISADMNKCVSSRS*RINFLPSARVSSKCSKNC 124
           +S    KC+ S   ++N+ P A   S C K C
Sbjct: 297 LSIGQRKCIFSDEVKLNYFPDAYTFSSCMKQC 328


>AE014298-2577|AAF48734.2|  477|Drosophila melanogaster CG8527-PA,
           isoform A protein.
          Length = 477

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 219 ISADMNKCVSSRS*RINFLPSARVSSKCSKNC 124
           +S    KC+ S   ++N+ P A   S C K C
Sbjct: 297 LSIGQRKCIFSDEVKLNYFPDAYTFSSCMKQC 328


>AE014298-1227|AAF46411.1|  237|Drosophila melanogaster CG1789-PA
           protein.
          Length = 237

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 431 FHEDPHADLVMSKKVPKFADSNEKPTRKKKSKSAE 535
           F ED + +L M + + K  D  E+  +KKKSK+ E
Sbjct: 138 FDEDGYMELDMGEWLLKHDDEEEEEEKKKKSKTTE 172


>AE014297-3047|AAN13884.1|  401|Drosophila melanogaster CG31336-PA
           protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -1

Query: 550 SHLIIFSAFRLLLPSWFLIR-VCE 482
           S L +F AFRL+L  WFL+  VC+
Sbjct: 162 SLLFVFMAFRLMLSPWFLLTLVCD 185


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,813,299
Number of Sequences: 53049
Number of extensions: 492163
Number of successful extensions: 1148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2276053890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)