Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0070
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024819-2|AAF59588.1|   71|Caenorhabditis elegans Hypothetical ...    80   1e-15
Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical pr...    31   0.59 
AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.     29   1.8  
AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated...    29   1.8  
AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated...    29   1.8  
Z82264-12|CAB05161.2|  300|Caenorhabditis elegans Hypothetical p...    28   4.1  
AF036689-3|AAB88322.2|  557|Caenorhabditis elegans Hypothetical ...    28   4.1  
Z48230-4|CAO78721.1|  484|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z48230-3|CAA88263.1|  515|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z48006-7|CAO78729.1|  484|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z48006-6|CAA88051.1|  515|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF040645-1|AAB94973.1|  377|Caenorhabditis elegans Hypothetical ...    27   7.2  

>AC024819-2|AAF59588.1|   71|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.2 protein.
          Length = 71

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 36/71 (50%), Positives = 52/71 (73%)
 Frame = +2

Query: 74  MVNVMKGVLVECDPAMKQFLLHLDETLALGRKFILQDLDETHLFISADIVETLQARVDDL 253
           MVNV KGVLV  DPA +Q L+HLD++  LG KFI+++LD+THLFI  +IV  L+ +V+ +
Sbjct: 1   MVNVKKGVLVTSDPAFRQLLIHLDDSRQLGSKFIVRELDDTHLFIEKEIVPMLENKVEQI 60

Query: 254 MDQLSIPVHDK 286
           M+ ++    DK
Sbjct: 61  MENMNPEAVDK 71


>Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical
           protein C11G6.1 protein.
          Length = 643

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 422 QDNFHEDPHADLVMSKKVPKFADSNEKPTRKKKSKSAEYYK 544
           +D F E P + +     +    D  +KP ++K+ KS+E YK
Sbjct: 552 EDQFPEGPSSSVAADTTLEFGEDQEKKPKKEKRDKSSEEYK 592


>AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.
          Length = 468

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 425 DNFHEDPHADLVMSKKVPKFADSNEKPTRKKKS 523
           DN ++DPH  L+     P F D N+     +K+
Sbjct: 131 DNVYQDPHQHLMHIHSAPNFHDENQNAANFRKT 163


>AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated
           protein 34, isoform b protein.
          Length = 310

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 425 DNFHEDPHADLVMSKKVPKFADSNEKPTRKKKS 523
           DN ++DPH  L+     P F D N+     +K+
Sbjct: 117 DNVYQDPHQHLMHIHSAPNFHDENQNAANFRKT 149


>AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated
           protein 34, isoform a protein.
          Length = 454

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 425 DNFHEDPHADLVMSKKVPKFADSNEKPTRKKKS 523
           DN ++DPH  L+     P F D N+     +K+
Sbjct: 117 DNVYQDPHQHLMHIHSAPNFHDENQNAANFRKT 149


>Z82264-12|CAB05161.2|  300|Caenorhabditis elegans Hypothetical
           protein C49C3.8 protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 204 NKCVSSRS*RINFLPSARVSSKCSKNCFIAGSHSTRTP 91
           +K V  R  R+N L   R   +CSK  FI+ S  +  P
Sbjct: 150 SKTVPYRKRRMNDLEDLRKIKECSKRAFISNSDQSEVP 187


>AF036689-3|AAB88322.2|  557|Caenorhabditis elegans Hypothetical
           protein C50A2.2 protein.
          Length = 557

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 464 SKKVPKFADSNEKPTRKKKSKSAEYYKMRFRKT 562
           +KKVP+ +   +    KKKSK A +Y+ +  KT
Sbjct: 161 NKKVPRRSQFTDPDAPKKKSKGARHYRDQNLKT 193


>Z48230-4|CAO78721.1|  484|Caenorhabditis elegans Hypothetical
           protein F19C6.4b protein.
          Length = 484

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/74 (20%), Positives = 35/74 (47%)
 Frame = -2

Query: 519 FFFLVGFSLESANFGTFFDITKSACGSS*KLSCSRASTAFLARRFLATSSKTFLLSASLT 340
           F F++  +  S +F    DI+KS C       C++ + +     F   + +  +L  ++T
Sbjct: 5   FIFIIVLTTVSQSFHKSIDISKSPCNDFYDYVCAKDTRSISNLTFTKMNQELEILKPNVT 64

Query: 339 LPDSREVILM*QLV 298
           + ++   I + ++V
Sbjct: 65  IENNGTFIALDKIV 78


>Z48230-3|CAA88263.1|  515|Caenorhabditis elegans Hypothetical
           protein F19C6.4a protein.
          Length = 515

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/74 (20%), Positives = 35/74 (47%)
 Frame = -2

Query: 519 FFFLVGFSLESANFGTFFDITKSACGSS*KLSCSRASTAFLARRFLATSSKTFLLSASLT 340
           F F++  +  S +F    DI+KS C       C++ + +     F   + +  +L  ++T
Sbjct: 5   FIFIIVLTTVSQSFHKSIDISKSPCNDFYDYVCAKDTRSISNLTFTKMNQELEILKPNVT 64

Query: 339 LPDSREVILM*QLV 298
           + ++   I + ++V
Sbjct: 65  IENNGTFIALDKIV 78


>Z48006-7|CAO78729.1|  484|Caenorhabditis elegans Hypothetical
           protein F19C6.4b protein.
          Length = 484

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/74 (20%), Positives = 35/74 (47%)
 Frame = -2

Query: 519 FFFLVGFSLESANFGTFFDITKSACGSS*KLSCSRASTAFLARRFLATSSKTFLLSASLT 340
           F F++  +  S +F    DI+KS C       C++ + +     F   + +  +L  ++T
Sbjct: 5   FIFIIVLTTVSQSFHKSIDISKSPCNDFYDYVCAKDTRSISNLTFTKMNQELEILKPNVT 64

Query: 339 LPDSREVILM*QLV 298
           + ++   I + ++V
Sbjct: 65  IENNGTFIALDKIV 78


>Z48006-6|CAA88051.1|  515|Caenorhabditis elegans Hypothetical
           protein F19C6.4a protein.
          Length = 515

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/74 (20%), Positives = 35/74 (47%)
 Frame = -2

Query: 519 FFFLVGFSLESANFGTFFDITKSACGSS*KLSCSRASTAFLARRFLATSSKTFLLSASLT 340
           F F++  +  S +F    DI+KS C       C++ + +     F   + +  +L  ++T
Sbjct: 5   FIFIIVLTTVSQSFHKSIDISKSPCNDFYDYVCAKDTRSISNLTFTKMNQELEILKPNVT 64

Query: 339 LPDSREVILM*QLV 298
           + ++   I + ++V
Sbjct: 65  IENNGTFIALDKIV 78


>AF040645-1|AAB94973.1|  377|Caenorhabditis elegans Hypothetical
           protein F52C6.5 protein.
          Length = 377

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 442 VFMKVILF*GLNCFSRTTFSRHIIQNLSSL 353
           V +K+I F  L C  +T    HI++N+SS+
Sbjct: 205 VLVKIIEFTELPCTEKTFVLSHIVKNMSSI 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,109,308
Number of Sequences: 27780
Number of extensions: 263834
Number of successful extensions: 671
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)