Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0069
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    26   1.9  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    26   1.9  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    26   1.9  

>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 307 PKTTITNRVSLARLSDGSKNVLLLFQNFHNXVEP 206
           PKT +T  +S +  S  S   +L  QNF+N   P
Sbjct: 577 PKTNLTRSLSYSEQSFDSGVSILSCQNFYNIFHP 610


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 131 ETKYDKNSYTRKLATRTLNITRAP 202
           +T YDKN  TR  A R ++  R P
Sbjct: 113 KTLYDKNPLTRSTAIRVMSSIRVP 136


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 280 SLARLSDGSKNVLLLFQNFHNXVEPXWRARYV*RARSEFSC 158
           S    SD +K +  + +N      P WR+    +A SE SC
Sbjct: 314 SFCSSSDDAKPITFVTKNLRKFPIPEWRSSLEVQAESEQSC 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,074,365
Number of Sequences: 5004
Number of extensions: 15256
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)