Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0069
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036699-1|AAB88362.1|  331|Caenorhabditis elegans Hypothetical ...    26   8.8  

>AF036699-1|AAB88362.1|  331|Caenorhabditis elegans Hypothetical
           protein F58F6.6 protein.
          Length = 331

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 210 NLXGARVMFSVRVASFRVYEFLSYLVSLFC 121
           N+  A  +FS  V   R++ F+SYL+  FC
Sbjct: 84  NIPAALSLFSKEVTQSRMFYFVSYLID-FC 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,831,990
Number of Sequences: 27780
Number of extensions: 83109
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)