Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0069
         (403 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    25   0.32 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    25   0.32 
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    24   0.75 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   0.99 
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   1.3  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   1.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   4.0  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.0 bits (52), Expect = 0.32
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 128 NETKYDKNSYTRKLATRTLNITRAP 202
           N   Y+ N+Y +KL    +NI + P
Sbjct: 99  NNNNYNNNNYNKKLYYNIINIEQIP 123


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.0 bits (52), Expect = 0.32
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 128 NETKYDKNSYTRKLATRTLNITRAP 202
           N   Y+ N+Y +KL    +NI + P
Sbjct: 99  NNNNYNNNNYNKKLYYNIINIEQIP 123


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.8 bits (49), Expect = 0.75
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 125 NNETKYDKNSYTRKLATRT--LNITRAP 202
           NN  KY+ N+Y +KL  +   +NI + P
Sbjct: 326 NNNYKYNYNNYNKKLYYKNYIINIEQIP 353


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.4 bits (48), Expect = 0.99
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 175 AHAKHNARAXXVRRDYENFEITIKHF 252
           AH   N+RA     DY     T+K+F
Sbjct: 127 AHGTGNSRANTYNFDYPQVPYTVKNF 152


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 125 NNETKYDKNSYTRKLATRT--LNITRAP 202
           NN+  Y+ N+Y +KL  +   +NI + P
Sbjct: 101 NNKYNYNNNNYNKKLYYKNYIINIEQIP 128


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 234 NNNKTFLDPSERRASETRFVIVVFGQILI 320
           N+N T L P + R +E   V +VF  +L+
Sbjct: 20  NSNYTELLPIDMRFNEGHIVSIVFYSVLM 48


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 150 FLSYLVSLFC 121
           F+SYL+ LFC
Sbjct: 424 FVSYLIGLFC 433


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 150 FLSYLVSLFC 121
           F+SYL+ LFC
Sbjct: 477 FVSYLIGLFC 486


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 362 RVTRSYSSLRVVLFN*NLTEDYD 294
           RVTR YSS   VL + + T+ +D
Sbjct: 241 RVTRCYSSDSAVLSDEDQTKGWD 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,001
Number of Sequences: 438
Number of extensions: 1014
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)