Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0068
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr 2|||...    33   0.061
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    29   0.99 
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    27   2.3  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   5.3  
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom...    26   7.0  

>SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 197

 Score = 32.7 bits (71), Expect = 0.061
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 250 VDEVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFERQAK 381
           +DE  D++   ++ VL R  KL +L  R+D L   +  F + AK
Sbjct: 145 LDETKDVLHKTIESVLARGEKLDDLIQRSDNLSTQSRMFYKSAK 188


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +2

Query: 614 DKNVCLINILKGMYHNFIPGVLYKQRLQTVDNAVMS*LVLKSLSNF*LSFAIKNV 778
           D + CL +++    H+FIP  +   ++    N   S  ++  LSNF    + KN+
Sbjct: 306 DYDFCLNHLISYSMHHFIPSFISLLKIPLKTNDAFSKKLITMLSNFREGDSAKNI 360


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 611 NDKNVCLINILKGMYHNFIPGV 676
           NDK V  +N+L   +HNF+ G+
Sbjct: 292 NDKTVVYLNLLCDSFHNFMDGL 313


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 191 PPIISPSGPVWGSAGARPPGLPPSAAI 111
           PP    + P +GS G R   +P S +I
Sbjct: 321 PPAYGMANPAYGSTGIRSSSIPSSGSI 347


>SPAC1296.04 |mug65||spore wall assembly protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 391 FSDS*LVSQTAMPLLEEHLPCSPILTTSHPCP 296
           FS+  L++    P +++H   SP+ T +  CP
Sbjct: 28  FSEKSLLNFDPAPWVDQHFVASPVSTKTATCP 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,018
Number of Sequences: 5004
Number of extensions: 58695
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)