Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0068
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0303 - 3337454-3337544,3338358-3338521,3338624-3338805,333...    45   6e-05
03_01_0459 + 3533718-3533916,3535009-3535150,3535290-3535410,353...    44   1e-04
02_05_1125 + 34282559-34282796,34283247-34283437,34283540-342836...    43   2e-04
06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334           42   4e-04
07_01_0987 + 8320205-8320472,8321549-8321690,8321773-8321893,832...    41   0.001
03_06_0242 + 32596846-32597268                                         29   4.2  
03_05_1016 + 29726949-29727503,29728863-29729504                       28   7.3  
06_01_0732 + 5397217-5397327,5399010-5399831                           28   9.6  
03_05_0903 - 28652447-28653346,28653890-28654056,28654075-286542...    28   9.6  

>10_01_0303 -
           3337454-3337544,3338358-3338521,3338624-3338805,
           3339088-3339322
          Length = 223

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 17/54 (31%), Positives = 33/54 (61%)
 Frame = +1

Query: 256 EVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFERQAKSLKNKFWLQNLK 417
           E+  +M  N++K+LDR  ++S L  +   +Q+ A  F +Q++ L+   W++N K
Sbjct: 139 EIHTVMVDNIEKILDRGERISLLVDKTSTMQDSAFHFRKQSRRLRRALWMKNAK 192


>03_01_0459 +
           3533718-3533916,3535009-3535150,3535290-3535410,
           3535513-3535575,3535677-3535823
          Length = 223

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/56 (33%), Positives = 31/56 (55%)
 Frame = +1

Query: 250 VDEVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFERQAKSLKNKFWLQNLK 417
           V EV  +M  N++KVLDR  K+  L  + + L+  A  F +    ++ K W +N+K
Sbjct: 141 VTEVKGVMMQNIEKVLDRGEKIELLVDKTEDLRSQAQDFRKAGTKIRRKMWWENMK 196


>02_05_1125 +
           34282559-34282796,34283247-34283437,34283540-34283629,
           34283630-34283793,34284139-34284352
          Length = 298

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 19/54 (35%), Positives = 33/54 (61%)
 Frame = +1

Query: 256 EVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFERQAKSLKNKFWLQNLK 417
           +V ++M  N+DKVL+R  +L  L  +   +Q    +F+RQA+  +N  W +N+K
Sbjct: 173 QVRNVMIDNIDKVLERGDRLELLVDKTATMQGNTMRFKRQARRFRNTVWWRNVK 226


>06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334
          Length = 197

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 19/56 (33%), Positives = 33/56 (58%)
 Frame = +1

Query: 250 VDEVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFERQAKSLKNKFWLQNLK 417
           + +V  +M  N+DKVL+R  +L  L  +   +Q    +F+RQA+  +N  W +N+K
Sbjct: 135 ISQVRTVMIDNIDKVLERGDRLDMLVDKTANMQGNTIRFKRQARRFRNTTWWRNVK 190


>07_01_0987 +
           8320205-8320472,8321549-8321690,8321773-8321893,
           8322190-8322264,8322784-8322846,8322934-8323086
          Length = 273

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +1

Query: 289 KVLDRDAKLSELDYRADALQEGASQFERQAKSLKNKFWLQNLK 417
           K L R  KLSEL  +   LQ  A +F+++   ++ K WLQN+K
Sbjct: 202 KTLGRGEKLSELQDKTSDLQSQAQEFKKKGVKIRRKTWLQNMK 244


>03_06_0242 + 32596846-32597268
          Length = 140

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -3

Query: 203 GVRGPPIISPSGPVWGSAG--ARPPGLPP 123
           GV  PP    +G VW   G   RPPG PP
Sbjct: 22  GVGAPPYRPAAGSVWSLPGMTPRPPGPPP 50


>03_05_1016 + 29726949-29727503,29728863-29729504
          Length = 398

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 191 PPIISPSGPVWGSAGARPPGLPP 123
           P +  P    WG+AGA PP  PP
Sbjct: 64  PALFRPCLGAWGAAGAPPPPPPP 86


>06_01_0732 + 5397217-5397327,5399010-5399831
          Length = 310

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -3

Query: 182 ISPS-GPVWGSAGARPPGL 129
           +SP  GPVW S+   PPGL
Sbjct: 180 VSPQYGPVWASSAVAPPGL 198


>03_05_0903 -
           28652447-28653346,28653890-28654056,28654075-28654264,
           28654916-28655210,28655514-28655760,28656017-28656443
          Length = 741

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +1

Query: 97  CETRKMAAEGGNP---GGLAPAEPQTGPDGEIIGGPR 198
           C      A  G+P     +APA+P+T P  E +GG R
Sbjct: 29  CRWISPTAAAGSPEAGAAVAPADPETPPPREPVGGAR 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,681,825
Number of Sequences: 37544
Number of extensions: 357915
Number of successful extensions: 1051
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)