Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0068
         (784 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11543| Best HMM Match : Synaptobrevin (HMM E-Value=0.00034)         34   0.15 
SB_24812| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_56599| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_6328| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.6  
SB_35903| Best HMM Match : Carn_acyltransf (HMM E-Value=1.9e-13)       28   9.8  
SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)                      28   9.8  
SB_6782| Best HMM Match : HAT (HMM E-Value=0.0082)                     28   9.8  

>SB_11543| Best HMM Match : Synaptobrevin (HMM E-Value=0.00034)
          Length = 629

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = +1

Query: 259 VVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFERQAKSL 387
           VVD+M++N+ KVLDR AKL +L  ++       S   R+++ L
Sbjct: 562 VVDVMQTNIAKVLDRGAKLDDLQDKSGMHSCQLSHTRRESQIL 604


>SB_24812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1384

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 271 MKSNVDKVLDRDAKLSELDYRADALQEGASQFERQAKSLKNKFWLQNLK 417
           +K N DK+ + + KL ++  +    +  AS  E++A  LKNK  + N K
Sbjct: 818 LKDNNDKIKELEKKLQDVTGKLKDAESKASDEEKRALELKNKLDISNKK 866


>SB_56599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 319 LTTSHPCPKLYLHSTS*YPPPHQLVL 242
           LT  HPC   +L  T  +PPP+ +VL
Sbjct: 6   LTNLHPCAPAFLSCTPVHPPPNAIVL 31


>SB_6328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 647 GMYHNFIPGVLYKQRLQTVDNAVM 718
           G   NF PGV Y +RL  +DN  M
Sbjct: 51  GYQSNFRPGVYYNRRLDELDNPAM 74


>SB_35903| Best HMM Match : Carn_acyltransf (HMM E-Value=1.9e-13)
          Length = 507

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 352 LLEEHLPCSPILTTSHPCPKLYLHS 278
           + +EHLP  P+ T  H C K YL S
Sbjct: 50  MYQEHLPSLPVQTLEHTCGK-YLES 73


>SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)
          Length = 498

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 22/89 (24%), Positives = 41/89 (46%)
 Frame = +3

Query: 447 YYHRAVVRKVHVMTYSSQLLGSTSNGKQSSMQLLF*KNVIIYALTKEMSIKFDVKMIRMY 626
           Y+H   + +V +  +   L    +NG+   + +LF + VI  AL ++   ++   M    
Sbjct: 172 YFHVKPLERVQLKNWRDYLDYEIANGEHRRVVILFERCVIACALYEDFWQRYASYMENHS 231

Query: 627 V**TF*KECITILFQECSINNDYKPLITL 713
           +      EC +I  + C+I+   KP I L
Sbjct: 232 I-----AECSSIYTRACTIHLPRKPNIHL 255


>SB_6782| Best HMM Match : HAT (HMM E-Value=0.0082)
          Length = 319

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 22/89 (24%), Positives = 41/89 (46%)
 Frame = +3

Query: 447 YYHRAVVRKVHVMTYSSQLLGSTSNGKQSSMQLLF*KNVIIYALTKEMSIKFDVKMIRMY 626
           Y+H   + +V +  +   L    +NG+   + +LF + VI  AL ++   ++   M    
Sbjct: 225 YFHVKPLERVQLKNWRDYLDYEIANGEHRRVVILFERCVIACALYEDFWQRYASYMENHS 284

Query: 627 V**TF*KECITILFQECSINNDYKPLITL 713
           +      EC +I  + C+I+   KP I L
Sbjct: 285 I-----AECSSIYTRACTIHLPRKPNIHL 308


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,412,072
Number of Sequences: 59808
Number of extensions: 433443
Number of successful extensions: 1146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)