Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0068
(784 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin... 86 3e-17
AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein. 86 3e-17
AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein. 86 3e-17
Z74472-1|CAA98946.2| 118|Caenorhabditis elegans Hypothetical pr... 75 4e-14
AF239889-1|AAF45301.1| 118|Caenorhabditis elegans synaptobrevin... 75 4e-14
AC084158-24|AAM15622.1| 245|Caenorhabditis elegans Hypothetical... 45 7e-05
L16622-5|ABC71836.1| 263|Caenorhabditis elegans Hypothetical pr... 31 1.2
L16622-4|AAA27914.1| 323|Caenorhabditis elegans Hypothetical pr... 31 1.2
U55363-8|AAA97966.1| 829|Caenorhabditis elegans Germinal center... 30 2.1
U41027-4|AAC48196.2| 455|Caenorhabditis elegans Hypothetical pr... 29 3.7
U41027-3|AAQ82846.1| 516|Caenorhabditis elegans Hypothetical pr... 29 3.7
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 28 6.6
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical pr... 28 8.7
U40797-7|AAB37546.1| 195|Caenorhabditis elegans Hypothetical pr... 28 8.7
M13235-1|AAA28129.1| 552|Caenorhabditis elegans protein ( C.ele... 28 8.7
>AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin
related protein 1 protein.
Length = 109
Score = 85.8 bits (203), Expect = 3e-17
Identities = 47/89 (52%), Positives = 56/89 (62%)
Frame = +1
Query: 151 AEPQTGPDGEIIGGPRTPXXXXXXXXXXXXXXXVDEVVDIMKSNVDKVLDRDAKLSELDY 330
A+ G G GGPR VDEVV IMK NV+KVL+RD KLS+LD
Sbjct: 3 AQGDAGAQGGSQGGPRPSNKRLQQTQAQ-----VDEVVGIMKVNVEKVLERDQKLSQLDD 57
Query: 331 RADALQEGASQFERQAKSLKNKFWLQNLK 417
RADALQEGASQFE+ A +LK K+W +N+K
Sbjct: 58 RADALQEGASQFEKSAATLKRKYWWKNIK 86
>AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 85.8 bits (203), Expect = 3e-17
Identities = 47/89 (52%), Positives = 56/89 (62%)
Frame = +1
Query: 151 AEPQTGPDGEIIGGPRTPXXXXXXXXXXXXXXXVDEVVDIMKSNVDKVLDRDAKLSELDY 330
A+ G G GGPR VDEVV IMK NV+KVL+RD KLS+LD
Sbjct: 3 AQGDAGAQGGSQGGPRPSNKRLQQTQAQ-----VDEVVGIMKVNVEKVLERDQKLSQLDD 57
Query: 331 RADALQEGASQFERQAKSLKNKFWLQNLK 417
RADALQEGASQFE+ A +LK K+W +N+K
Sbjct: 58 RADALQEGASQFEKSAATLKRKYWWKNIK 86
>AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 85.8 bits (203), Expect = 3e-17
Identities = 47/89 (52%), Positives = 56/89 (62%)
Frame = +1
Query: 151 AEPQTGPDGEIIGGPRTPXXXXXXXXXXXXXXXVDEVVDIMKSNVDKVLDRDAKLSELDY 330
A+ G G GGPR VDEVV IMK NV+KVL+RD KLS+LD
Sbjct: 3 AQGDAGAQGGSQGGPRPSNKRLQQTQAQ-----VDEVVGIMKVNVEKVLERDQKLSQLDD 57
Query: 331 RADALQEGASQFERQAKSLKNKFWLQNLK 417
RADALQEGASQFE+ A +LK K+W +N+K
Sbjct: 58 RADALQEGASQFEKSAATLKRKYWWKNIK 86
>Z74472-1|CAA98946.2| 118|Caenorhabditis elegans Hypothetical
protein F23H12.1 protein.
Length = 118
Score = 75.4 bits (177), Expect = 4e-14
Identities = 28/56 (50%), Positives = 49/56 (87%)
Frame = +1
Query: 250 VDEVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFERQAKSLKNKFWLQNLK 417
V+EV+D+M++NV+KV++RD +L+ LD+RA+ LQ GASQF++ +++L+ K+W QN++
Sbjct: 41 VNEVIDVMRNNVNKVMERDVQLNSLDHRAEVLQNGASQFQQSSRTLRQKYWWQNIR 96
>AF239889-1|AAF45301.1| 118|Caenorhabditis elegans
synaptobrevin-like protein protein.
Length = 118
Score = 75.4 bits (177), Expect = 4e-14
Identities = 28/56 (50%), Positives = 49/56 (87%)
Frame = +1
Query: 250 VDEVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFERQAKSLKNKFWLQNLK 417
V+EV+D+M++NV+KV++RD +L+ LD+RA+ LQ GASQF++ +++L+ K+W QN++
Sbjct: 41 VNEVIDVMRNNVNKVMERDVQLNSLDHRAEVLQNGASQFQQSSRTLRQKYWWQNIR 96
>AC084158-24|AAM15622.1| 245|Caenorhabditis elegans Hypothetical
protein Y69A2AR.6 protein.
Length = 245
Score = 44.8 bits (101), Expect = 7e-05
Identities = 18/56 (32%), Positives = 36/56 (64%)
Frame = +1
Query: 250 VDEVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFERQAKSLKNKFWLQNLK 417
VD+V +M NV+++++R +L ++ R +AL+ A+ F+ A+ ++ F +NLK
Sbjct: 163 VDDVRQVMADNVERIMERGERLENMENRTEALRTSATSFKSTARRVQRHFCQKNLK 218
>L16622-5|ABC71836.1| 263|Caenorhabditis elegans Hypothetical
protein C02D5.2b protein.
Length = 263
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Frame = +2
Query: 572 CVNQGNVYKI*CKNDKNVCLINILK-------GMYHNFIPGVLYKQRLQTVDNAV 715
C +GN ++ C++ C IN L G H ++PGVL Q ++D A+
Sbjct: 125 CTEKGNDFECQCQHGPTECQINQLMNCVIDRFGFPHRYLPGVLCMQGKYSLDEAM 179
>L16622-4|AAA27914.1| 323|Caenorhabditis elegans Hypothetical
protein C02D5.2a protein.
Length = 323
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Frame = +2
Query: 572 CVNQGNVYKI*CKNDKNVCLINILK-------GMYHNFIPGVLYKQRLQTVDNAV 715
C +GN ++ C++ C IN L G H ++PGVL Q ++D A+
Sbjct: 185 CTEKGNDFECQCQHGPTECQINQLMNCVIDRFGFPHRYLPGVLCMQGKYSLDEAM 239
>U55363-8|AAA97966.1| 829|Caenorhabditis elegans Germinal center
kinase family protein2 protein.
Length = 829
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 331 CSPILTTSHPCPKLYLHSTS*YPPPH 254
C P L HP LYL + S Y PPH
Sbjct: 209 CQPPLFDLHPMQVLYLMTKSGYKPPH 234
>U41027-4|AAC48196.2| 455|Caenorhabditis elegans Hypothetical
protein R08E3.3a protein.
Length = 455
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +1
Query: 250 VDEVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFERQAKSLKNK 396
V+E + N+ + + KL+E Y+A LQE SQFE Q + L+NK
Sbjct: 218 VEEATEENNENLVLQAEYEQKLAE--YKA--LQEKRSQFEEQNRELENK 262
>U41027-3|AAQ82846.1| 516|Caenorhabditis elegans Hypothetical
protein R08E3.3b protein.
Length = 516
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +1
Query: 250 VDEVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFERQAKSLKNK 396
V+E + N+ + + KL+E Y+A LQE SQFE Q + L+NK
Sbjct: 218 VEEATEENNENLVLQAEYEQKLAE--YKA--LQEKRSQFEEQNRELENK 262
>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
protein C18C4.5b protein.
Length = 1046
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 259 VVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFERQAKSLKN 393
V D+ + N+D + + KLSE+D Q+ SQ Q ++LKN
Sbjct: 183 VNDVSRQNMDSLSE---KLSEMDRTLREEQQQKSQLRSQTETLKN 224
>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
protein C18C4.5a protein.
Length = 1022
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 259 VVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFERQAKSLKN 393
V D+ + N+D + + KLSE+D Q+ SQ Q ++LKN
Sbjct: 183 VNDVSRQNMDSLSE---KLSEMDRTLREEQQQKSQLRSQTETLKN 224
>Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical
protein M79.1c protein.
Length = 1209
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 253 DEVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFER 372
DEV +K N DK L+ D + S + R+D+ +S +R
Sbjct: 558 DEVQKQLKKNNDKKLESDKRRSNVRERSDSKSRHSSHHDR 597
>Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical
protein M79.1b protein.
Length = 1214
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 253 DEVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFER 372
DEV +K N DK L+ D + S + R+D+ +S +R
Sbjct: 563 DEVQKQLKKNNDKKLESDKRRSNVRERSDSKSRHSSHHDR 602
>Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical
protein M79.1a protein.
Length = 1224
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 253 DEVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFER 372
DEV +K N DK L+ D + S + R+D+ +S +R
Sbjct: 573 DEVQKQLKKNNDKKLESDKRRSNVRERSDSKSRHSSHHDR 612
>U40797-7|AAB37546.1| 195|Caenorhabditis elegans Hypothetical
protein C28C12.3 protein.
Length = 195
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +1
Query: 124 GGNPGGL--APAEPQTGPDGEIIGGPR 198
GG+ GGL P P+ GP G GGPR
Sbjct: 166 GGSHGGLRGGPGGPRDGPRGGPRGGPR 192
>M13235-1|AAA28129.1| 552|Caenorhabditis elegans protein (
C.elegans DNA homologousto the v-abl oncogene. ).
Length = 552
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 253 DEVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFER 372
DEV +K N DK L+ D + S + R+D+ +S +R
Sbjct: 424 DEVQKQLKKNNDKKLESDKRRSNVRERSDSKSRHSSHHDR 463
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,899,509
Number of Sequences: 27780
Number of extensions: 347199
Number of successful extensions: 955
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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