Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0068
(784 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g54300.1 68416.m06001 synaptobrevin family protein similar to... 52 6e-07
At2g33120.1 68415.m04060 synaptobrevin-related protein / vesicl... 48 9e-06
At1g04760.1 68414.m00472 synaptobrevin family protein similar to... 47 1e-05
At1g04750.1 68414.m00470 synaptobrevin family protein similar to... 47 2e-05
At2g32670.1 68415.m03994 synaptobrevin family protein similar to... 46 3e-05
At5g11150.1 68418.m01303 synaptobrevin / vesicle-associated memb... 41 8e-04
At4g32150.1 68417.m04573 synaptobrevin family protein similar to... 40 0.002
At2g25340.1 68415.m03031 synaptobrevin family protein similar to... 40 0.002
At4g15780.1 68417.m02402 synaptobrevin-related family protein si... 31 0.65
At2g22750.1 68415.m02697 basic helix-loop-helix (bHLH) family pr... 31 0.86
At1g56570.1 68414.m06506 pentatricopeptide (PPR) repeat-containi... 29 3.5
At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 28 6.1
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 28 8.0
At3g49740.1 68416.m05438 pentatricopeptide (PPR) repeat-containi... 28 8.0
>At3g54300.1 68416.m06001 synaptobrevin family protein similar to
vesicle-associated membrane protein 7B (At VAMP7B),
Arabidopsis thaliana, EMBL:AF025333
Length = 240
Score = 51.6 bits (118), Expect = 6e-07
Identities = 24/56 (42%), Positives = 35/56 (62%)
Frame = +1
Query: 250 VDEVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFERQAKSLKNKFWLQNLK 417
+ EV IM N++KVLDR K+ L + + LQ A F+RQ + L+ K WLQ+L+
Sbjct: 157 ITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQ 212
>At2g33120.1 68415.m04060 synaptobrevin-related protein /
vesicle-associated membrane protein 722 (VAMP722) (SAR1)
identical to r to Vesicle-associated membrane protein
722 (AtVAMP722) Synaptobrevin-related protein 1
(SP:P47192) {Arabidopsis thaliana}; identical to cDNA
synaptobrevin-related protein (SAR1) GI:600709
Length = 221
Score = 47.6 bits (108), Expect = 9e-06
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +1
Query: 250 VDEVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFERQAKSLKNKFWLQNLK 417
V EV +M N++KVLDR K+ L + + L+ A F Q ++ K W QN+K
Sbjct: 138 VSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMK 193
>At1g04760.1 68414.m00472 synaptobrevin family protein similar to
Vesicle-associated membrane protein 722 (AtVAMP722)
Synaptobrevin-related protein 1 (SP:P47192) {Arabidopsis
thaliana}
Length = 220
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +1
Query: 250 VDEVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFERQAKSLKNKFWLQNLK 417
V EV +M N++KVLDR K+ L + + L+ A F Q +K K W +N+K
Sbjct: 138 VTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWFENMK 193
>At1g04750.1 68414.m00470 synaptobrevin family protein similar to
Vesicle-associated membrane protein 722 (AtVAMP722)
Synaptobrevin-related protein 1 (SP:P47192) {Arabidopsis
thaliana};
Length = 219
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +1
Query: 250 VDEVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFERQAKSLKNKFWLQNLK 417
V EV +M N++KVLDR K+ L + + L+ A F ++ K WLQN+K
Sbjct: 138 VSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMK 193
>At2g32670.1 68415.m03994 synaptobrevin family protein similar to
vesicle-associated membrane protein 7 [Rattus
norvegicus] GI:9502258, SP|P51809 Synaptobrevin-like
protein 1 {Homo sapiens}; contains Pfam profile PF00957:
Synaptobrevin
Length = 285
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +1
Query: 250 VDEVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFERQAKSLKNKFWLQNLK 417
V EV +M N++KVLDR K+ L + + L+ A F Q ++ K W +N+K
Sbjct: 203 VTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMK 258
>At5g11150.1 68418.m01303 synaptobrevin / vesicle-associated
membrane protein 713 (VAMP713) identified as AtVAMP713
by Sanderfoot, A.A., et al. in Plant Physiol. 124:
1558-69 (2000); similar to Vesicle-associated membrane
protein 722 (AtVAMP722) Synaptobrevin-related protein 1
(SP:P47192) {Arabidopsis thaliana}; synaptobrevin-like
protein Sybl1, Mus musculus, EMBL:MMU133536
Length = 221
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/56 (32%), Positives = 33/56 (58%)
Frame = +1
Query: 250 VDEVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFERQAKSLKNKFWLQNLK 417
+ +V ++M N+DKVLDR +L L + + +Q +F +QA+ + W +N+K
Sbjct: 135 MSQVRNVMIENIDKVLDRGERLELLVDKTENMQGNTFRFRKQARRYRTIMWWRNVK 190
>At4g32150.1 68417.m04573 synaptobrevin family protein similar to
Synaptobrevin-like protein 1 (SP:P51809) [Homo sapiens]
Length = 219
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +1
Query: 250 VDEVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFERQAKSLKNKFWLQNLK 417
+++V +M N+DKVLDR +L L + +Q +F +QA+ ++ W +N K
Sbjct: 134 MNQVRGVMIENIDKVLDRGERLELLVDKTANMQGNTFRFRKQARRFRSNVWWRNCK 189
>At2g25340.1 68415.m03031 synaptobrevin family protein similar to
Synaptobrevin-like protein 1 (SP:P51809) [Homo sapiens]
Length = 219
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +1
Query: 250 VDEVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFERQAKSLKNKFWLQNLK 417
+++V D+M N+D +LDR +L L + +Q +F +Q + N W +N K
Sbjct: 134 MNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTRRFNNTVWWRNCK 189
>At4g15780.1 68417.m02402 synaptobrevin-related family protein
similar to Vesicle-associated membrane protein 722
(AtVAMP722) Synaptobrevin-related protein 1 (SP:P47192)
{Arabidopsis thaliana}
Length = 194
Score = 31.5 bits (68), Expect = 0.65
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 250 VDEVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFER 372
V EV IM N+DK +DR L+ L + + L+ A ++++
Sbjct: 139 VSEVKSIMLENIDKAIDRGENLTVLTDKTENLRSQAREYKK 179
>At2g22750.1 68415.m02697 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 304
Score = 31.1 bits (67), Expect = 0.86
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -1
Query: 433 PLLLSSLDSVTKICFSDS*LVSQTAMPLLEEHLPCSPILTTSHPCPKLYLHSTS*YPPP- 257
P LSSLD T C++ L + L+EE P S IL T+H P L+ S+S PPP
Sbjct: 9 PQSLSSLDDTTT-CYN---LDASCNKSLVEER-P-SKILKTTHISPNLHPFSSSNPPPPK 62
Query: 256 HQ 251
HQ
Sbjct: 63 HQ 64
>At1g56570.1 68414.m06506 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 611
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = +3
Query: 399 LVTESKDDNNNGCDWRYYHRAVVRKVHVMTYS-SQLLGSTSNGKQSSMQLLF*KNVIIYA 575
++T N N W +H V + ++ S +L S N K + L + ++
Sbjct: 82 MITGYASSNYNARAWECFHEMVKQGTSPNEFTLSSVLKSCRNMKVLAYGALV--HGVVVK 139
Query: 576 LTKEMSIKFDVKMIRMYV**TF*KECITILFQECSINND 692
L E S+ D M+ MY + E ++F++ + ND
Sbjct: 140 LGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKND 178
>At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A)
Length = 135
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = +1
Query: 280 NVDKVLDRDAKLSELDYRADALQEGASQFERQAKSLKNKFWLQNLK 417
++ V+ DA +S D + AL+E ++FE + K+ KN+++ L+
Sbjct: 90 DLKNVVSADA-ISSKDKKVTALKEAKAKFEERFKTGKNRWFFTKLR 134
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 364 TAMPLLEEHLPCSPILTTSHPCPKLYLHSTS*YPPP 257
TA+PLL +L C L + P P + +S PPP
Sbjct: 682 TALPLLPLYLTCRHRLNLASPPPPAPYYYSSPQPPP 717
>At3g49740.1 68416.m05438 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 737
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 631 QTYILIIFTSNFIDISLVNAYIITFF*NNNCIDDCFPFE 515
Q + L+I FI S+VNA I +F +D C FE
Sbjct: 210 QVHSLVIKAGFFIASSVVNALITMYFNCQVVVDACLVFE 248
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,514,426
Number of Sequences: 28952
Number of extensions: 302322
Number of successful extensions: 794
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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