Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0067
         (641 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1PCB0 Cluster: Pyridoxine 5'-phosphate oxidase; n=5; E...    66   5e-10
UniRef50_Q4YSV3 Cluster: Putative uncharacterized protein; n=6; ...    33   7.7  

>UniRef50_Q1PCB0 Cluster: Pyridoxine 5'-phosphate oxidase; n=5;
           Endopterygota|Rep: Pyridoxine 5'-phosphate oxidase -
           Bombyx mori (Silk moth)
          Length = 257

 Score = 66.5 bits (155), Expect = 5e-10
 Identities = 31/31 (100%), Positives = 31/31 (100%)
 Frame = +2

Query: 386 MLNNCVVLIRKSVLLSPNLKYIRNMSIDIGG 478
           MLNNCVVLIRKSVLLSPNLKYIRNMSIDIGG
Sbjct: 1   MLNNCVVLIRKSVLLSPNLKYIRNMSIDIGG 31



 Score = 56.8 bits (131), Expect = 4e-07
 Identities = 26/31 (83%), Positives = 27/31 (87%)
 Frame = +1

Query: 547 SVAFTGMRIKY*EKDETFLEKHLVSKEPFGQ 639
           S+   GMRIKY EKDETFLEKHLVSKEPFGQ
Sbjct: 26  SIDIGGMRIKYKEKDETFLEKHLVSKEPFGQ 56


>UniRef50_Q4YSV3 Cluster: Putative uncharacterized protein; n=6;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 1124

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
 Frame = -2

Query: 556 KQQNKENILIQIQRAFLFKMLLNKKLTTNINTHVADVFQVRA**N*FSDQNNT-VIQHLV 380
           K++ K+NI  +I + +  K +LNKK++T+ N  +    Q     N F +   T +I   +
Sbjct: 481 KEKKKDNIFSEIIKGY--KKILNKKISTHPNEEILIYNQTFEELNFFIENYLTDIIDKNI 538

Query: 379 KSSYRSRLIIIRLVIKLCNLYN*RKVXF**IIMILY 272
           K     + I+  ++  L ++ + RK+       +LY
Sbjct: 539 KKKKEKKYILPDILSNLMHILSMRKINISFFFSVLY 574


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 465,301,877
Number of Sequences: 1657284
Number of extensions: 7512975
Number of successful extensions: 14788
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14782
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)