Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0067
         (641 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    22   4.9  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   6.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   6.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   6.5  

>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 480 LPPISILMLRMYFKLGLSKTDFLI 409
           L PI ++ L  + K+GLS   FLI
Sbjct: 10  LSPIILIPLFRWPKIGLSALGFLI 33


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = +3

Query: 141 IGKFFFTNNCNKKLIMTNKTDINTRFKKTKLP 236
           I ++ F   CNK    T   D N   K+   P
Sbjct: 240 IARYNFERLCNKLKRATRFNDFNEAIKEAYFP 271


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 226  VFLNLVFISVLFVIISFLLQL 164
            VF   +F + LFV++ FLLQL
Sbjct: 1269 VFAFFMF-NALFVLVVFLLQL 1288


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 226  VFLNLVFISVLFVIISFLLQL 164
            VF   +F + LFV++ FLLQL
Sbjct: 1269 VFAFFMF-NALFVLVVFLLQL 1288


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,352
Number of Sequences: 336
Number of extensions: 2249
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)