Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0067
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.4  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   1.9  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   1.9  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 511 MLSVFVLECFLCSVAFTGMRIKY*EKDETF 600
           MLS  V+  F+C   F   R+ Y  +D T+
Sbjct: 261 MLSAVVITFFICWAPFHVQRLLYVYEDSTY 290


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +3

Query: 159 TNNCNKKLIMTNKTDINTRFKKTKLPDSVQVTTLGTVQYKIII 287
           T+N +K +I++NK + +      + P+ +Q+      + K+ I
Sbjct: 93  TSNTSKTIILSNKLESSDDISLFRGPEGIQINATELQKIKLEI 135


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +3

Query: 159 TNNCNKKLIMTNKTDINTRFKKTKLPDSVQVTTLGTVQYKIII 287
           T+N +K +I++NK + +      + P+ +Q+      + K+ I
Sbjct: 93  TSNTSKTVILSNKLESSDDISLFRGPEGIQINATELQKIKLEI 135


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +3

Query: 159 TNNCNKKLIMTNKTDINTRFKKTKLPDSVQVTTLGTVQYKIII 287
           T+N +K +I++NK + +      + P+ +Q+      + K+ I
Sbjct: 93  TSNTSKTVILSNKLESSDDISLFRGPEGIQINATELQKIKLEI 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,322
Number of Sequences: 438
Number of extensions: 2709
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)