Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0066
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1QH62 Cluster: Putative uncharacterized protein; n=1; ...    34   2.9  
UniRef50_Q7MUR9 Cluster: D-alanyl-D-alanine carboxypeptidase; n=...    33   5.0  

>UniRef50_Q1QH62 Cluster: Putative uncharacterized protein; n=1;
           Nitrobacter hamburgensis X14|Rep: Putative
           uncharacterized protein - Nitrobacter hamburgensis
           (strain X14 / DSM 10229)
          Length = 1306

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -1

Query: 447 HYPANFCREAVTATPPFEPKRITASRRK*AGWWYLPVRTPQRSYNQ*SHIMS 292
           H+ A  C+E V +TP + PK  + S R  AGW  LP   P R+    + ++S
Sbjct: 695 HFDA-ICKERVGSTPQYLPKFSSYSLRMPAGWRLLPHLPPARAAQLTNQLLS 745


>UniRef50_Q7MUR9 Cluster: D-alanyl-D-alanine carboxypeptidase; n=1;
           Porphyromonas gingivalis|Rep: D-alanyl-D-alanine
           carboxypeptidase - Porphyromonas gingivalis (Bacteroides
           gingivalis)
          Length = 510

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 374 EAVMRFGSKGGVAVTASRQKLAG*WYAICIIGNAISRKAPYK 499
           EA ++ GS  GV   A   +  G WY++ ++GN  S  AP +
Sbjct: 444 EAYLKSGSMKGVLGYAGYVRFQGEWYSVVLMGNDFSSSAPVR 485


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,467,373
Number of Sequences: 1657284
Number of extensions: 11682030
Number of successful extensions: 20692
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20691
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)