Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0066
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.4  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    25   7.8  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    25   7.8  

>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 537 YIRYYFGDWKILVLYGAFLDIALPIIHIAYHY 442
           Y+  Y  D  I++L G  L+I   +IHI  HY
Sbjct: 339 YLTRYLTDRDIILL-GCCLNIVCMVIHITIHY 369


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 347 YHHPAYFRREAVMRFGS 397
           Y HP  FR  AV+ FGS
Sbjct: 249 YFHPHRFRSRAVLEFGS 265


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 516 LQNNILYIHYVKTS-QGIKELIKRLFI*LLKNSVFLVH 626
           +QNNI+++ Y +TS QG+  ++    +  +  ++ L H
Sbjct: 348 IQNNIIFLEYSRTSKQGMWSILSPCILIAVYTNLLLQH 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,820
Number of Sequences: 5004
Number of extensions: 50744
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)