Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0066
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-4|ABC48239.1|  370|Caenorhabditis elegans Hypothetical ...    29   4.1  
AC024791-37|AAF60671.1|  196|Caenorhabditis elegans Hypothetical...    29   4.1  

>AC087079-4|ABC48239.1|  370|Caenorhabditis elegans Hypothetical
           protein Y37E3.5a protein.
          Length = 370

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 441 PANFCREAVTATPPFEPKRITASRRK---*AGWWYLPVRTPQRSYNQ*SHIMSL 289
           P NFCR + T+T P  P+  +            ++LP + P R Y++   I ++
Sbjct: 309 PVNFCRISQTSTKPVSPESNSVKEEPTIILKDNYFLPPKAPGRQYSRIQRIQNV 362


>AC024791-37|AAF60671.1|  196|Caenorhabditis elegans Hypothetical
           protein Y47G6A.26 protein.
          Length = 196

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 450 YHYPANFCREAVTATPPFEPKRITASRRK 364
           Y Y  NFCRE V  +  F PK +  + ++
Sbjct: 150 YRYDQNFCREFVGISEAFSPKSLENAEKE 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,422,079
Number of Sequences: 27780
Number of extensions: 280156
Number of successful extensions: 444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)