Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0065
         (722 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   1.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   4.4  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   4.4  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   5.8  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 522 SLPGEHHAVSSVEDGVGYVRDLGSGGTG 439
           S P ++  V  + DG GY+ D  SG  G
Sbjct: 382 SNPCQNGGVCRISDGGGYICDCPSGTNG 409


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 370 ARCNRVGKPVICATQMLESM 429
           ARCN +    IC +Q+  ++
Sbjct: 458 ARCNEIRPDAICVSQLKNAL 477


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 92  PRRTSRTCSSASN 130
           P+RT+ T SSASN
Sbjct: 203 PQRTASTASSASN 215


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 190 RGILGEKGKNIKIISKIENH 249
           RG+L +  +N   +SKI+ H
Sbjct: 218 RGLLLDTARNFLTVSKIKKH 237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,958
Number of Sequences: 336
Number of extensions: 3264
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)