Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0065
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...   272   3e-74
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.67 
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    29   0.89 
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    28   1.2  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    27   3.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   4.7  
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb...    26   6.3  
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    26   6.3  
SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ...    25   8.3  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    25   8.3  

>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score =  272 bits (668), Expect = 3e-74
 Identities = 134/210 (63%), Positives = 159/210 (75%)
 Frame = +1

Query: 19  DNAGMLGSRKGVNLPGIPVDLPAVSEKDKSDLLFGVEQGVDMIFASFIRNGAALHEIRGI 198
           +N G + S+KGVNLP   VDLPA+SEKDK+DL FGV+ GVDMIFASFIR    +  IR +
Sbjct: 175 NNNGKISSKKGVNLPKTDVDLPALSEKDKADLRFGVKNGVDMIFASFIRRAEDVIHIREV 234

Query: 199 LGEKGKNIKIISKIENHQGMVNLDEIIAESDGIMVARGDLGIEIPPEKVFLAQKTMIARC 378
           LGE+GKNIKII KIEN QG+ N D I+  +DGIMVARGDLGIEIP  +VF+AQK MIA+C
Sbjct: 235 LGEEGKNIKIICKIENQQGVNNFDSILDVTDGIMVARGDLGIEIPASQVFVAQKMMIAKC 294

Query: 379 NRVGKPVICATQMLESMVKKPRPTRAEISDVANAILDGADCVMLSGETAKGDYPVECVHT 558
           N  GKPV CATQMLESM   PRPTRAE+SDV NA+LDGAD VMLSGET KG YPVE V  
Sbjct: 295 NIAGKPVACATQMLESMTYNPRPTRAEVSDVGNAVLDGADLVMLSGETTKGSYPVEAVTY 354

Query: 559 MANICKEAEAVIWHRQLFNDLVSEVKPPID 648
           MA   + AEA I +  L+ ++   V+ P++
Sbjct: 355 MAETARVAEASIPYGSLYQEMFGLVRRPLE 384


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
 Frame = -1

Query: 590  TASASLQMLAMV*THS-TG*SPLAVSPESITQSAPSRMALA--TSEISALVGRGFLT--M 426
            TAS +    + V T S T  S  +++  S+T S+ S +A A  T   ++ V    +T  +
Sbjct: 1019 TASVTDSSTSSVATASATDSSTSSIAVASVTGSSTSSVATASATDSSTSSVATASITGSL 1078

Query: 425  DSSI*VAQITGFPTRLHLAI-MVFWARNTFSGGISIPRSPRATMIPSDSAIISSKLT 258
             SSI  A +TG PT    A+        T S  I+   S  A  + SD+A  SS +T
Sbjct: 1079 SSSIATASVTGSPTSSVTAVSSTSSVEGTASSTIAAAAS--AATLSSDAASGSSTVT 1133


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -3

Query: 537 IVALGSLPGEHHAVSSVEDGVGYVRDLGSGGTGLLNH-GFQHLSRTDHWFSNPIASGDHG 361
           IV    +    HA    E+   Y++D+GS     LNH      S+T   +  PI++ D  
Sbjct: 77  IVFRSKVVSRRHAQIFYENNTWYIQDMGSSSGTFLNHVRLSPPSKTSKPY--PISNNDIL 134

Query: 360 LLGEEY 343
            LG +Y
Sbjct: 135 QLGADY 140


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 71  PWTYPQSPRRTSRTCSSASNKAL 139
           P T P SPRR+ +  S A NKAL
Sbjct: 7   PSTAPSSPRRSIQRISDAKNKAL 29


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 103 KSDLLFGVEQGVDMIFASFIRNGAALHEIRGIL 201
           K +LLFGV+ G D+IF   +       EIR  L
Sbjct: 341 KYELLFGVQSGGDLIFVPTVSLTIIQSEIRNRL 373


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = -1

Query: 209  FSPRMPRISCSAAPLRMNDAKIISTPCSTPKSRSDLSFSETAGRSTGMPGRLTP 48
            FSPRM  ++ S +PL MN A   S       S     F+  A      P  L P
Sbjct: 1588 FSPRMGPVNNSGSPLAMNAAGQPSLAVPAVPSAPSNHFNPFAKMQPPAPSPLQP 1641


>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 14  SRITQVCSDPGKASTCPAYPW 76
           S + +VC D G+ S    YPW
Sbjct: 230 SSVNEVCKDDGEKSQGRRYPW 250


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 53  STCPAYPWTYPQSPRRTSRTCS 118
           S  P  PW YP SP   +RT S
Sbjct: 29  SVNPITPWGYPASPISIARTTS 50


>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 453 SGGTGLLNHGFQHLSRTDHWFSNPIASGD-HGLL 355
           + G   + HGF  L++T H  S P+   D HG++
Sbjct: 182 AAGVSCVKHGFLELAQTSHQ-SGPVTYHDYHGIV 214


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
 Frame = +1

Query: 445 PTRAEISDVANAI-LDGADCVMLSGETAKGDYP----VECVHTMANICKEAE-AVIWHRQ 606
           P R    ++ N +  +G  C + +GE  + DYP    V C   M N+    + AVI   Q
Sbjct: 204 PLRLLAHEIYNRLQANGIACNLYTGEEIRNDYPFPQVVSCTVEMCNLSTTFDVAVIDEIQ 263

Query: 607 LFND 618
           +  D
Sbjct: 264 MMAD 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,161
Number of Sequences: 5004
Number of extensions: 55720
Number of successful extensions: 187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)