Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0065
(722 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1769| Best HMM Match : PK (HMM E-Value=7.9e-19) 180 1e-45
SB_1468| Best HMM Match : PK (HMM E-Value=2.2e-19) 74 1e-13
SB_9651| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_3182| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_42557| Best HMM Match : GAD (HMM E-Value=1.4) 29 2.9
SB_26227| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_45575| Best HMM Match : Keratin_B2 (HMM E-Value=8.8) 28 6.7
SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0) 28 8.8
SB_4396| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_9110| Best HMM Match : DUF321 (HMM E-Value=4.5) 28 8.8
SB_4961| Best HMM Match : Suf (HMM E-Value=0.00086) 28 8.8
>SB_1769| Best HMM Match : PK (HMM E-Value=7.9e-19)
Length = 145
Score = 180 bits (437), Expect = 1e-45
Identities = 88/131 (67%), Positives = 102/131 (77%)
Frame = +1
Query: 22 NAGMLGSRKGVNLPGIPVDLPAVSEKDKSDLLFGVEQGVDMIFASFIRNGAALHEIRGIL 201
N +LGS+KGVNLP VDLPAVSE+DK D+ F VE VDMIFASFIR + EIR +L
Sbjct: 15 NDALLGSKKGVNLPNCAVDLPAVSEQDKKDIAFAVEMEVDMIFASFIRKPEDIAEIRKLL 74
Query: 202 GEKGKNIKIISKIENHQGMVNLDEIIAESDGIMVARGDLGIEIPPEKVFLAQKTMIARCN 381
+ KNIKI++KIENH+G+ +EI+ +DGIMVARGDLGIEIP EKVFLAQK MIARCN
Sbjct: 75 EKHAKNIKIVAKIENHEGVRRFNEILEVADGIMVARGDLGIEIPAEKVFLAQKMMIARCN 134
Query: 382 RVGKPVICATQ 414
G PVICATQ
Sbjct: 135 MKGVPVICATQ 145
>SB_1468| Best HMM Match : PK (HMM E-Value=2.2e-19)
Length = 211
Score = 74.1 bits (174), Expect = 1e-13
Identities = 36/56 (64%), Positives = 41/56 (73%)
Frame = +1
Query: 22 NAGMLGSRKGVNLPGIPVDLPAVSEKDKSDLLFGVEQGVDMIFASFIRNGAALHEI 189
N +LGS+KGVNLP VDLPAVSE+DK D+ F VE VDMIFASFIR + EI
Sbjct: 155 NDALLGSKKGVNLPNCAVDLPAVSEQDKKDIAFAVEMEVDMIFASFIRKPEDIAEI 210
>SB_9651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 64.1 bits (149), Expect = 1e-10
Identities = 30/33 (90%), Positives = 31/33 (93%)
Frame = +1
Query: 415 MLESMVKKPRPTRAEISDVANAILDGADCVMLS 513
MLESMV+ PRPTRAE SDVANAILDGADCVMLS
Sbjct: 1 MLESMVQNPRPTRAETSDVANAILDGADCVMLS 33
>SB_3182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 31.1 bits (67), Expect = 0.95
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 64 GIPV-DLPAVSEKDKSDLLFGVEQGVDMI 147
GIPV LP E+DK LLFG E VD++
Sbjct: 801 GIPVLTLPGKLERDKKFLLFGEEDAVDVL 829
>SB_42557| Best HMM Match : GAD (HMM E-Value=1.4)
Length = 366
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 522 SLPGEHHAVSSVEDGVGYVRDLGSGGTGLLNH 427
+LP E V + ++G Y+ D GSGG G+ H
Sbjct: 303 ALPAEKRKVLADKEGSIYISDAGSGGAGVEFH 334
>SB_26227| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 581
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -1
Query: 317 RSPRATMIPSDSAIISSKLTIPW*FSILEMILMFLPFSPRMPRISCSAAPLRMNDAKIIS 138
+ P M+ A + L + W S+L +L FLP S +PR C+ P +I
Sbjct: 113 KCPLTYMMTVTHARVVIALVVIWIDSVLVSVLPFLPLSSGVPR-ECNYHPTSWWSVMVII 171
Query: 137 TPCSTP 120
T P
Sbjct: 172 TNVIIP 177
>SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1226
Score = 28.3 bits (60), Expect = 6.7
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = -1
Query: 341 FSGGISIPRSPRATMIPSDSAIISSKLTIPW*FSILEMILMFLPFSPRMPRISCSAAPLR 162
F G I PR P T++ D A + K +I F + + P PR + LR
Sbjct: 43 FKGVIPRPRDPERTLVRLDYAKLQGKSSIDIYFDLGGSSNLLQP--PRFVEEPSAVIALR 100
Query: 161 MNDAKIISTPCSTPKSRS 108
+ +I + +TP +R+
Sbjct: 101 KSTVQINCSTIATPVART 118
>SB_45575| Best HMM Match : Keratin_B2 (HMM E-Value=8.8)
Length = 271
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 29 VCSDPGKASTCPAYPWTYPQSPRRTSRTCSSASNKAL 139
VC++P + T YP T SP RT + S++ +KAL
Sbjct: 198 VCTNPPFSPTAAPYPVTIVLSPTRT-KNVSASRHKAL 233
>SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)
Length = 1161
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 438 LLNHGFQHLSRTDHWFSNPI 379
LL GFQ LS DHW P+
Sbjct: 859 LLTAGFQELSERDHWDVKPL 878
>SB_4396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 556
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 222 QDHLQDRKSPGNGQFRRDYS*IRWYHGCSR 311
++HL + K+P + Q + S W GC+R
Sbjct: 128 ENHLNEHKTPSSPQEQSSLSDANWQDGCTR 157
>SB_9110| Best HMM Match : DUF321 (HMM E-Value=4.5)
Length = 199
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 327 DPSRKGIPRPEDHDRQMQSGWKTSDLCDSNA-GIHG*EAPSHQSRDL*RSQ 476
DP KG+P+P+ D +++S L DS G+ + P+ + +DL R Q
Sbjct: 15 DPEVKGLPKPQLPDPEVES-LPQPQLSDSEVKGLPQAQLPNPEMKDLSRPQ 64
>SB_4961| Best HMM Match : Suf (HMM E-Value=0.00086)
Length = 809
Score = 27.9 bits (59), Expect = 8.8
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Frame = -3
Query: 567 VGHGVNTLD-RIVALGSLPGEHHAVSSVEDGVGYVRDLGSGGTGLLNHGFQHLS------ 409
V H + +LD R+V + + HH++ S++D R +G T ++H + L
Sbjct: 464 VHHSLKSLDDRLVGVENTVWVHHSLKSLDD-----RLVGVENTVWVHHSLKSLDDRLVGV 518
Query: 408 RTDHWFSNPIASGDHGLLGEEYLFWRDLDTQISASNHDTIGFSYNLV*IDHSLVIFD 238
W + + S D L+G E W + + + + +G N V + HSL D
Sbjct: 519 ENTVWVHHSLKSLDDRLVGVENTVW--VHHSLKSLDDRLVGVE-NTVWVHHSLKSLD 572
Score = 27.9 bits (59), Expect = 8.8
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Frame = -3
Query: 567 VGHGVNTLD-RIVALGSLPGEHHAVSSVEDGVGYVRDLGSGGTGLLNHGFQHLS------ 409
V H + +LD R+V + + HH++ S++D R +G T ++H + L
Sbjct: 544 VHHSLKSLDDRLVGVENTVWVHHSLKSLDD-----RLVGVENTVWVHHSLKSLDDRLVGV 598
Query: 408 RTDHWFSNPIASGDHGLLGEEYLFWRDLDTQISASNHDTIGFSYNLV*IDHSLVIFD 238
W + + S D L+G E W + + + + +G N V + HSL D
Sbjct: 599 ENTVWVHHSLKSLDDRLVGVENTVW--VHHSLKSLDDRLVGVE-NTVWVHHSLKSLD 652
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,836,329
Number of Sequences: 59808
Number of extensions: 461942
Number of successful extensions: 1571
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1562
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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