Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0065
(722 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-12|CAJ30227.1| 558|Caenorhabditis elegans Hypothetical p... 332 1e-91
Z81068-4|CAE54896.1| 531|Caenorhabditis elegans Hypothetical pr... 332 1e-91
Z81068-3|CAB02983.1| 600|Caenorhabditis elegans Hypothetical pr... 332 1e-91
Z81068-2|CAB02984.1| 562|Caenorhabditis elegans Hypothetical pr... 332 1e-91
Z69385-1|CAA93424.2| 515|Caenorhabditis elegans Hypothetical pr... 316 1e-86
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr... 32 0.36
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr... 32 0.36
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical... 30 1.9
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical... 30 1.9
AC024809-6|AAF59545.1| 213|Caenorhabditis elegans Ral (ras-rela... 30 1.9
Z79759-4|CAB02139.2| 395|Caenorhabditis elegans Hypothetical pr... 29 2.5
U67737-1|AAC63596.1| 395|Caenorhabditis elegans MEL-26 protein. 29 2.5
Z82268-9|CAD89738.1| 509|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr... 29 3.4
AL023835-17|CAD89760.1| 509|Caenorhabditis elegans Hypothetical... 29 3.4
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical... 29 3.4
Z92793-2|CAD56589.1| 684|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z92793-1|CAB07229.1| 681|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z72503-11|CAD56560.1| 684|Caenorhabditis elegans Hypothetical p... 29 4.4
Z72503-10|CAA96601.1| 681|Caenorhabditis elegans Hypothetical p... 29 4.4
Z68882-3|CAA93106.2| 568|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z81556-2|CAB04525.2| 445|Caenorhabditis elegans Hypothetical pr... 28 7.8
U23412-2|AAN65294.1| 678|Caenorhabditis elegans Glycyl trna syn... 28 7.8
U23412-1|AAK21465.2| 742|Caenorhabditis elegans Glycyl trna syn... 28 7.8
>Z81068-12|CAJ30227.1| 558|Caenorhabditis elegans Hypothetical
protein F25H5.3d protein.
Length = 558
Score = 332 bits (816), Expect = 1e-91
Identities = 161/234 (68%), Positives = 186/234 (79%)
Frame = +1
Query: 19 DNAGMLGSRKGVNLPGIPVDLPAVSEKDKSDLLFGVEQGVDMIFASFIRNGAALHEIRGI 198
+N GMLGSRKGVNLPG VDLPAVSEKD DL FGVEQGVD+IFASFIRN + IR +
Sbjct: 225 ENGGMLGSRKGVNLPGTIVDLPAVSEKDCKDLQFGVEQGVDIIFASFIRNAEGIRTIRKV 284
Query: 199 LGEKGKNIKIISKIENHQGMVNLDEIIAESDGIMVARGDLGIEIPPEKVFLAQKTMIARC 378
LGEKGK IKII+KIEN +G+ N DEII+ESDG+MVARGDLGIEIP EKVFLAQK +I++C
Sbjct: 285 LGEKGKKIKIIAKIENQEGVDNADEIISESDGVMVARGDLGIEIPAEKVFLAQKMLISKC 344
Query: 379 NRVGKPVICATQMLESMVKKPRPTRAEISDVANAILDGADCVMLSGETAKGDYPVECVHT 558
NR GKPVICATQMLESMV KPRPTRAE SDVANA+LDGADCVMLSGETAKG+YPV+ +
Sbjct: 345 NRAGKPVICATQMLESMVHKPRPTRAEGSDVANAVLDGADCVMLSGETAKGEYPVDALKI 404
Query: 559 MANICKEAEAVIWHRQLFNDLVSEVKPPIDPXXXXXXXXXXXXTKCLASAIVVI 720
M ICKEAEA ++HR+LF++L+ + P D C ASAI++I
Sbjct: 405 MHYICKEAEAAVYHRRLFDELLQNTQKPTDMSHTIAIAATSAAASCHASAILLI 458
>Z81068-4|CAE54896.1| 531|Caenorhabditis elegans Hypothetical
protein F25H5.3c protein.
Length = 531
Score = 332 bits (816), Expect = 1e-91
Identities = 161/234 (68%), Positives = 186/234 (79%)
Frame = +1
Query: 19 DNAGMLGSRKGVNLPGIPVDLPAVSEKDKSDLLFGVEQGVDMIFASFIRNGAALHEIRGI 198
+N GMLGSRKGVNLPG VDLPAVSEKD DL FGVEQGVD+IFASFIRN + IR +
Sbjct: 198 ENGGMLGSRKGVNLPGTIVDLPAVSEKDCKDLQFGVEQGVDIIFASFIRNAEGIRTIRKV 257
Query: 199 LGEKGKNIKIISKIENHQGMVNLDEIIAESDGIMVARGDLGIEIPPEKVFLAQKTMIARC 378
LGEKGK IKII+KIEN +G+ N DEII+ESDG+MVARGDLGIEIP EKVFLAQK +I++C
Sbjct: 258 LGEKGKKIKIIAKIENQEGVDNADEIISESDGVMVARGDLGIEIPAEKVFLAQKMLISKC 317
Query: 379 NRVGKPVICATQMLESMVKKPRPTRAEISDVANAILDGADCVMLSGETAKGDYPVECVHT 558
NR GKPVICATQMLESMV KPRPTRAE SDVANA+LDGADCVMLSGETAKG+YPV+ +
Sbjct: 318 NRAGKPVICATQMLESMVHKPRPTRAEGSDVANAVLDGADCVMLSGETAKGEYPVDALKI 377
Query: 559 MANICKEAEAVIWHRQLFNDLVSEVKPPIDPXXXXXXXXXXXXTKCLASAIVVI 720
M ICKEAEA ++HR+LF++L+ + P D C ASAI++I
Sbjct: 378 MHYICKEAEAAVYHRRLFDELLQNTQKPTDMSHTIAIAATSAAASCHASAILLI 431
>Z81068-3|CAB02983.1| 600|Caenorhabditis elegans Hypothetical
protein F25H5.3b protein.
Length = 600
Score = 332 bits (816), Expect = 1e-91
Identities = 161/234 (68%), Positives = 186/234 (79%)
Frame = +1
Query: 19 DNAGMLGSRKGVNLPGIPVDLPAVSEKDKSDLLFGVEQGVDMIFASFIRNGAALHEIRGI 198
+N GMLGSRKGVNLPG VDLPAVSEKD DL FGVEQGVD+IFASFIRN + IR +
Sbjct: 267 ENGGMLGSRKGVNLPGTIVDLPAVSEKDCKDLQFGVEQGVDIIFASFIRNAEGIRTIRKV 326
Query: 199 LGEKGKNIKIISKIENHQGMVNLDEIIAESDGIMVARGDLGIEIPPEKVFLAQKTMIARC 378
LGEKGK IKII+KIEN +G+ N DEII+ESDG+MVARGDLGIEIP EKVFLAQK +I++C
Sbjct: 327 LGEKGKKIKIIAKIENQEGVDNADEIISESDGVMVARGDLGIEIPAEKVFLAQKMLISKC 386
Query: 379 NRVGKPVICATQMLESMVKKPRPTRAEISDVANAILDGADCVMLSGETAKGDYPVECVHT 558
NR GKPVICATQMLESMV KPRPTRAE SDVANA+LDGADCVMLSGETAKG+YPV+ +
Sbjct: 387 NRAGKPVICATQMLESMVHKPRPTRAEGSDVANAVLDGADCVMLSGETAKGEYPVDALKI 446
Query: 559 MANICKEAEAVIWHRQLFNDLVSEVKPPIDPXXXXXXXXXXXXTKCLASAIVVI 720
M ICKEAEA ++HR+LF++L+ + P D C ASAI++I
Sbjct: 447 MHYICKEAEAAVYHRRLFDELLQNTQKPTDMSHTIAIAATSAAASCHASAILLI 500
>Z81068-2|CAB02984.1| 562|Caenorhabditis elegans Hypothetical
protein F25H5.3a protein.
Length = 562
Score = 332 bits (816), Expect = 1e-91
Identities = 161/234 (68%), Positives = 186/234 (79%)
Frame = +1
Query: 19 DNAGMLGSRKGVNLPGIPVDLPAVSEKDKSDLLFGVEQGVDMIFASFIRNGAALHEIRGI 198
+N GMLGSRKGVNLPG VDLPAVSEKD DL FGVEQGVD+IFASFIRN + IR +
Sbjct: 229 ENGGMLGSRKGVNLPGTIVDLPAVSEKDCKDLQFGVEQGVDIIFASFIRNAEGIRTIRKV 288
Query: 199 LGEKGKNIKIISKIENHQGMVNLDEIIAESDGIMVARGDLGIEIPPEKVFLAQKTMIARC 378
LGEKGK IKII+KIEN +G+ N DEII+ESDG+MVARGDLGIEIP EKVFLAQK +I++C
Sbjct: 289 LGEKGKKIKIIAKIENQEGVDNADEIISESDGVMVARGDLGIEIPAEKVFLAQKMLISKC 348
Query: 379 NRVGKPVICATQMLESMVKKPRPTRAEISDVANAILDGADCVMLSGETAKGDYPVECVHT 558
NR GKPVICATQMLESMV KPRPTRAE SDVANA+LDGADCVMLSGETAKG+YPV+ +
Sbjct: 349 NRAGKPVICATQMLESMVHKPRPTRAEGSDVANAVLDGADCVMLSGETAKGEYPVDALKI 408
Query: 559 MANICKEAEAVIWHRQLFNDLVSEVKPPIDPXXXXXXXXXXXXTKCLASAIVVI 720
M ICKEAEA ++HR+LF++L+ + P D C ASAI++I
Sbjct: 409 MHYICKEAEAAVYHRRLFDELLQNTQKPTDMSHTIAIAATSAAASCHASAILLI 462
>Z69385-1|CAA93424.2| 515|Caenorhabditis elegans Hypothetical
protein ZK593.1 protein.
Length = 515
Score = 316 bits (775), Expect = 1e-86
Identities = 153/234 (65%), Positives = 177/234 (75%)
Frame = +1
Query: 19 DNAGMLGSRKGVNLPGIPVDLPAVSEKDKSDLLFGVEQGVDMIFASFIRNGAALHEIRGI 198
+N G LG+RKGVNLPG VDLPAV+ KD DLLFGVEQGVD+IFASFIRN +H+IR +
Sbjct: 182 ENGGALGTRKGVNLPGTIVDLPAVTSKDIEDLLFGVEQGVDIIFASFIRNADGIHKIRQV 241
Query: 199 LGEKGKNIKIISKIENHQGMVNLDEIIAESDGIMVARGDLGIEIPPEKVFLAQKTMIARC 378
LGEKGK+I II+KIE+ G+ N DEII SDG+MVARGDLGIEIP EKVFLAQK +IA+C
Sbjct: 242 LGEKGKHIYIIAKIESEDGVTNCDEIIEASDGVMVARGDLGIEIPAEKVFLAQKMLIAKC 301
Query: 379 NRVGKPVICATQMLESMVKKPRPTRAEISDVANAILDGADCVMLSGETAKGDYPVECVHT 558
N GKPVICATQMLESM+ KPRPTRAE SDVANA+LDG DCVMLSGETAKGDYPVE +
Sbjct: 302 NLAGKPVICATQMLESMITKPRPTRAECSDVANAVLDGVDCVMLSGETAKGDYPVEALAI 361
Query: 559 MANICKEAEAVIWHRQLFNDLVSEVKPPIDPXXXXXXXXXXXXTKCLASAIVVI 720
M NICKEAE+ +H + F +L+ K P C A AI++I
Sbjct: 362 MHNICKEAESAFFHMKHFEELILHTKKPTGMTHTTAIAAVSATITCRAVAIILI 415
>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
protein T12D8.1 protein.
Length = 2561
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -1
Query: 188 ISCSAAPLR-MNDAKIISTPCSTPKSRSDLSFSETAGRSTGMPGRLTPFRDPSIPALS 18
+SC ++ + +N+ IS + D+ S +A S G L+PF DPS+P +S
Sbjct: 108 LSCDSSDVSSLNNFVCISCRRRSQMLPDDVMLSASARPSRGQDAPLSPFSDPSVPQIS 165
>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
protein T12D8.1 protein.
Length = 2561
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -1
Query: 188 ISCSAAPLR-MNDAKIISTPCSTPKSRSDLSFSETAGRSTGMPGRLTPFRDPSIPALS 18
+SC ++ + +N+ IS + D+ S +A S G L+PF DPS+P +S
Sbjct: 108 LSCDSSDVSSLNNFVCISCRRRSQMLPDDVMLSASARPSRGQDAPLSPFSDPSVPQIS 165
>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
protein Y43F8B.3b protein.
Length = 1398
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 23 TQVCSDPGKASTCPAYPWTYPQSPRRTSRTCSSASNKA 136
TQ CS +TCP W + S T+ C AS A
Sbjct: 865 TQTCSASANFNTCPLNHWCHIGSDLSTTVCCPGASTNA 902
>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
protein Y43F8B.3a protein.
Length = 1816
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 23 TQVCSDPGKASTCPAYPWTYPQSPRRTSRTCSSASNKA 136
TQ CS +TCP W + S T+ C AS A
Sbjct: 1283 TQTCSASANFNTCPLNHWCHIGSDLSTTVCCPGASTNA 1320
>AC024809-6|AAF59545.1| 213|Caenorhabditis elegans Ral (ras-related
gtpase) homologprotein 1 protein.
Length = 213
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +1
Query: 328 IPPEKVFLAQKTMIARCNRVGKPVICATQMLESMVKKPRPTRAEISDVANAILDGADCVM 507
+PP++ + K ++ VGK + M + V++ PT+A+ S +LDG +C +
Sbjct: 10 LPPQQQ-VVHKVIMVGTGGVGKSALTLQFMYDEFVEEYEPTKAD-SYRKKVVLDGEECSI 67
Query: 508 LSGETA-KGDY 537
+TA + DY
Sbjct: 68 DILDTAGQEDY 78
>Z79759-4|CAB02139.2| 395|Caenorhabditis elegans Hypothetical
protein ZK858.4 protein.
Length = 395
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 7 FEQQDNAGMLGSRKGV-NLPGIPVDLPAVS 93
F Q D G+ V NLPG+P+D+P ++
Sbjct: 356 FSQIDRQSSTGATSSVSNLPGVPMDIPGIT 385
>U67737-1|AAC63596.1| 395|Caenorhabditis elegans MEL-26 protein.
Length = 395
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 7 FEQQDNAGMLGSRKGV-NLPGIPVDLPAVS 93
F Q D G+ V NLPG+P+D+P ++
Sbjct: 356 FSQIDRQSSTGATSSVSNLPGVPMDIPGIT 385
>Z82268-9|CAD89738.1| 509|Caenorhabditis elegans Hypothetical
protein Y37A1B.1b protein.
Length = 509
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 393 TSDLCDSNAGIHG*EAPSHQSRDL*RSQRHPRRS 494
TSD D N G G ++P H+S R PRR+
Sbjct: 201 TSDRADRNGGARGNDSPLHRSSAARRHSPPPRRA 234
>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 393 TSDLCDSNAGIHG*EAPSHQSRDL*RSQRHPRRS 494
TSD D N G G ++P H+S R PRR+
Sbjct: 201 TSDRADRNGGARGNDSPLHRSSAARRHSPPPRRA 234
>AL023835-17|CAD89760.1| 509|Caenorhabditis elegans Hypothetical
protein Y37A1B.1b protein.
Length = 509
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 393 TSDLCDSNAGIHG*EAPSHQSRDL*RSQRHPRRS 494
TSD D N G G ++P H+S R PRR+
Sbjct: 201 TSDRADRNGGARGNDSPLHRSSAARRHSPPPRRA 234
>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 393 TSDLCDSNAGIHG*EAPSHQSRDL*RSQRHPRRS 494
TSD D N G G ++P H+S R PRR+
Sbjct: 201 TSDRADRNGGARGNDSPLHRSSAARRHSPPPRRA 234
>Z92793-2|CAD56589.1| 684|Caenorhabditis elegans Hypothetical
protein C26C6.5b protein.
Length = 684
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 215 LPFSPRMPRISCSAAPLRMNDAKIISTPC-STPKSRSDLSFSETAGR 78
+P PR+P+I S A STP STPKS S S +TA +
Sbjct: 542 IPLVPRLPQIPSSTGSSTPTQAVKTSTPIHSTPKSSSS-SAKKTAAQ 587
>Z92793-1|CAB07229.1| 681|Caenorhabditis elegans Hypothetical
protein C26C6.5a protein.
Length = 681
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 215 LPFSPRMPRISCSAAPLRMNDAKIISTPC-STPKSRSDLSFSETAGR 78
+P PR+P+I S A STP STPKS S S +TA +
Sbjct: 539 IPLVPRLPQIPSSTGSSTPTQAVKTSTPIHSTPKSSSS-SAKKTAAQ 584
>Z72503-11|CAD56560.1| 684|Caenorhabditis elegans Hypothetical
protein C26C6.5b protein.
Length = 684
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 215 LPFSPRMPRISCSAAPLRMNDAKIISTPC-STPKSRSDLSFSETAGR 78
+P PR+P+I S A STP STPKS S S +TA +
Sbjct: 542 IPLVPRLPQIPSSTGSSTPTQAVKTSTPIHSTPKSSSS-SAKKTAAQ 587
>Z72503-10|CAA96601.1| 681|Caenorhabditis elegans Hypothetical
protein C26C6.5a protein.
Length = 681
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 215 LPFSPRMPRISCSAAPLRMNDAKIISTPC-STPKSRSDLSFSETAGR 78
+P PR+P+I S A STP STPKS S S +TA +
Sbjct: 539 IPLVPRLPQIPSSTGSSTPTQAVKTSTPIHSTPKSSSS-SAKKTAAQ 584
>Z68882-3|CAA93106.2| 568|Caenorhabditis elegans Hypothetical
protein C47E12.3 protein.
Length = 568
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +1
Query: 103 KSDLLFGVEQGVDMIFASFIRNGAALHEIRGILGEKGKNIKIISKIENHQGMVN---LDE 273
KS +LFG ++ +DM SF R + R +I I +++ G + +D
Sbjct: 295 KSYILFGNQRDLDMYNESFARITTYMRRGRSRCSSLEGDIPIYVNVDSRDGSTSNTWIDS 354
Query: 274 IIAESDGIMVARGDL 318
+ A G++V G++
Sbjct: 355 LQASFAGVLVLAGEV 369
>Z81556-2|CAB04525.2| 445|Caenorhabditis elegans Hypothetical
protein F58G1.2 protein.
Length = 445
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +1
Query: 133 GVDMIFASFIRNGAALHEIRGILGEKGKNIKIISKIENHQGMVNLDEIIAESDGIMV 303
GV + AS +RN +H+ R ILG G+ IK K+ ++ +N + AE D +V
Sbjct: 26 GVGELLAS-LRNPPKIHKERIILGGDGRPIK---KLRENRAALNFIDPSAELDKCIV 78
>U23412-2|AAN65294.1| 678|Caenorhabditis elegans Glycyl trna
synthetase protein1, isoform b protein.
Length = 678
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = -1
Query: 218 FLPFSPRMPRISCSAAPLRMNDAKIISTPCSTPKSRSDLSFSETAGRSTGMPGR 57
FL F P + I CS P+ ND +I + + S S S+G GR
Sbjct: 550 FLAFKPLVAPIKCSVLPISANDT-LIPVMDAVKEELSRFEMSYKVDDSSGTIGR 602
>U23412-1|AAK21465.2| 742|Caenorhabditis elegans Glycyl trna
synthetase protein1, isoform a protein.
Length = 742
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = -1
Query: 218 FLPFSPRMPRISCSAAPLRMNDAKIISTPCSTPKSRSDLSFSETAGRSTGMPGR 57
FL F P + I CS P+ ND +I + + S S S+G GR
Sbjct: 614 FLAFKPLVAPIKCSVLPISANDT-LIPVMDAVKEELSRFEMSYKVDDSSGTIGR 666
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,626,900
Number of Sequences: 27780
Number of extensions: 331481
Number of successful extensions: 1027
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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