Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0065
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   2.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.9  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              22   6.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   6.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.9  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 427 WIPAFESHRSLVFQPD 380
           WIPAF  HR     P+
Sbjct: 397 WIPAFAIHRDSAIYPN 412


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 100 DKSDLLFGVEQGVDMIFASFIRNGAALHEIRGIL 201
           D  D L+GV+ GVD I    + N   +H+ R I+
Sbjct: 118 DACDRLWGVDTGVDDI----LGNNTVIHQPRIII 147


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 163 RNGAALHEIRGILGEKGKNIKIISKIENHQGMVNLDEIIAESDGIM 300
           R+    HE++ +       IK+I++ EN +        I +  G+M
Sbjct: 37  RSNMTFHELKKLRDSSEARIKLINEEENFRNYGCFLACIWQQTGVM 82


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +1

Query: 442 RPTRAEISDVANAILDGADCVMLSGETAKGDYPVECVHTMANICKEAEAVIWHR 603
           +PT     ++   I++  D VML   T +G  P+     + NI  +   +  HR
Sbjct: 139 KPTTTS-DELKRGIINPED-VMLKRRTGEGSKPIFEREEIKNILNKTNEITEHR 190


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 44  GKASTCPAYPWTY 82
           G AS C A+PW +
Sbjct: 287 GVASFCKAFPWHF 299


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 117 EQVRLVLLGDC 85
           EQ+R+ +LGDC
Sbjct: 313 EQLRIKILGDC 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,197
Number of Sequences: 438
Number of extensions: 4030
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)