Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0064
         (377 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   0.77 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   2.3  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   3.1  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   4.1  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    20   7.2  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    20   7.2  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    20   9.5  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.4 bits (48), Expect = 0.77
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 32  FQSGEGVGESLQGL 73
           FQ G+G+G+ LQG+
Sbjct: 172 FQPGKGLGKDLQGI 185


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 181 HCLQLGTELCDVISYWFPQ 125
           H +++GTE   VIS+ FP+
Sbjct: 157 HLVRVGTEPRRVISFPFPE 175


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = +1

Query: 34  PEW*GCRRESPRSGSGDSGPAQHRAFNGSGLEGTNKRSHRR 156
           P W  C R S R  SG S P   R       +G      +R
Sbjct: 191 PAWVYCTRYSDRPSSGRS-PRTRRVKKPGAKQGAPTAEEKR 230


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 310 DDDLAVPIXGRPQEPLD 260
           D +L++   G PQ PLD
Sbjct: 11  DQNLSMGSLGAPQSPLD 27


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 28  PVPEW*GCRRESPRSGSGDSGP 93
           P P   G    SP +GSG+  P
Sbjct: 87  PSPTVSGSEMSSPGAGSGNLSP 108


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 28  PVPEW*GCRRESPRSGSGDSGP 93
           P P   G    SP +GSG+  P
Sbjct: 87  PSPTVSGSEMSSPGAGSGNLSP 108


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = -2

Query: 181 HCLQLGTELCDVISYWFPQ 125
           HC  +G +     + WFP+
Sbjct: 180 HCTLIGEDNISAKNPWFPR 198


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,900
Number of Sequences: 336
Number of extensions: 1476
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  7803226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)