Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0064
         (377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    31   0.079
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    27   0.74 
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    25   3.0  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    25   3.0  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   3.9  

>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 30.7 bits (66), Expect = 0.079
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +2

Query: 44  EGVGESLQGLVLATPARHSIVPSTDQDLREPIRDHIAELRTELETMRSSITSQAREHVRA 223
           E VG S Q   L+  ++ S     ++  R  + D IAELR  + T+RS   S   + ++ 
Sbjct: 411 EPVGLSTQEQNLSPLSKRSAHNMIEKRYRSNLNDKIAELRDAVPTLRSGYNSTTADELKG 470

Query: 224 DEVLLT 241
             V L+
Sbjct: 471 TYVPLS 476


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 27.5 bits (58), Expect = 0.74
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 231 CYSRSGPALWSSGS*GRPXIGTARSSSRKGLTSARVTP 344
           C+     ++WS GS     + T +SSS KG+T   V P
Sbjct: 95  CHDNGQISMWSKGS--WLLVHTLKSSSHKGITGIAVHP 130


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +2

Query: 74  VLATPARHSIVPSTDQDLREPIRDHI-AELRTEL--ETMRSSITSQAREHVR 220
           ++      ++ P  ++DL +P+RD+I  E R +L  E+   S  S +  H R
Sbjct: 150 IIQNEVEQTLSPKDEKDLLDPMRDYIHREKRRKLKHESSDRSDKSDSNRHSR 201


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 307 DDLAVPIXGRPQEPLDQSAGPERE*HLVRPHVLPGLTR 194
           DD+ V + G   EP+++   P    HL++   L G T+
Sbjct: 154 DDIPVEVSGGDIEPVNEFTSPPLNSHLLQNIKLSGYTQ 191


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 50  VGESLQGLVLATPA-RHSIVPSTDQDLREPIRDHIAELRTELETMRSSITSQ 202
           +  SL     +TPA  HSI PS        I     +  + L T+ S++TS+
Sbjct: 566 ISSSLTATSTSTPALTHSITPSNTSYTSSLIPSSSTDYSSSLITVCSNVTSE 617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,381,461
Number of Sequences: 5004
Number of extensions: 22763
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)