Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0064
(377 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124... 37 0.005
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 36 0.014
01_05_0242 + 19828521-19829252 31 0.40
07_03_1502 + 27010328-27010509,27010715-27010973,27011989-270129... 30 0.69
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 29 1.2
07_03_1589 + 27948546-27948548,27948890-27948958,27949235-279493... 29 1.6
10_01_0138 + 1657028-1657489 28 2.1
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466... 28 2.1
12_01_0304 - 2299676-2299938,2300493-2300841 28 2.8
03_01_0393 - 3062859-3062972,3063027-3063311,3063472-3063759,306... 27 4.9
01_06_0209 - 27549615-27550246,27550358-27550452,27553290-275535... 27 4.9
01_01_0243 - 2002383-2002512,2002733-2002884 27 4.9
06_03_1294 - 29080347-29081447 27 6.5
01_06_0787 - 31999632-32000045,32000128-32000214,32000295-320005... 27 6.5
12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747 26 8.6
07_03_0387 - 17536026-17536636,17536772-17537150 26 8.6
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 26 8.6
05_05_0247 + 23593921-23594556 26 8.6
03_05_0505 + 24991699-24991921,24992100-24992665 26 8.6
>03_05_0478 -
24712157-24712177,24712206-24712260,24712377-24712473,
24712558-24713302,24713822-24714189,24714279-24714419,
24715480-24715849
Length = 598
Score = 37.1 bits (82), Expect = 0.005
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 191 ITSQAREHVRADEVLLTFGASALVERFL--RPTXNRNCKVVVAEGTDVGESHAMARRLSN 364
I S A VR ++VLLT+G+S++VE L R +V+V + E + RRL
Sbjct: 403 IVSHAITKVRDNDVLLTYGSSSVVEMILDHAHELGRKFRVIVVDSRPKLEGQGLLRRLVE 462
Query: 365 SGVS 376
G++
Sbjct: 463 KGIN 466
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 35.5 bits (78), Expect = 0.014
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 191 ITSQAREHVRADEVLLTFGASALVERFL--RPTXNRNCKVVVAEGTDVGESHAMARRLSN 364
I S A VR D+VLLT+ +S++VE + +VVV + E A+ RL
Sbjct: 398 IVSHAIAKVRDDDVLLTYASSSVVEMIFDHANELGKKFRVVVVDSRPNNEGQALLHRLVA 457
Query: 365 SGVS 376
G+S
Sbjct: 458 KGIS 461
>01_05_0242 + 19828521-19829252
Length = 243
Score = 30.7 bits (66), Expect = 0.40
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 49 CRRESPRSGSGDSGPAQHRAFNGSG 123
CRR+ R G+GD PA+ RA G G
Sbjct: 72 CRRDRGRGGAGDGVPAKLRAGRGGG 96
>07_03_1502 +
27010328-27010509,27010715-27010973,27011989-27012975,
27013388-27013822
Length = 620
Score = 29.9 bits (64), Expect = 0.69
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 354 RRAMA*LSPTSVPSATTTLQFLXWVGLRNRSTRALAPNV 238
R A++ LSP V + TT +Q L W + R LA +
Sbjct: 135 RNAISLLSPLVVMTVTTLIQMLGWTNQEDNQIRLLAAKI 173
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 149 IAELRTELETMRSSITSQAREHVRADEVL 235
IAEL EL+T R+ + ++A H + E+L
Sbjct: 409 IAELNNELDTNRTMLDNEAEAHKKLSEIL 437
>07_03_1589 +
27948546-27948548,27948890-27948958,27949235-27949335,
27949460-27950173,27951172-27951333,27951669-27952458
Length = 612
Score = 28.7 bits (61), Expect = 1.6
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 140 RDHIAELRTELETMRSSITSQAREHVRADEVLLTFGASALVERFLRPTXNRNCKVVVAEG 319
R+H+ E T L R++ + R + ++T GAS + + + KV++A+
Sbjct: 326 RNHVEEADTVLIPARNNRRQETRGSLAGKVAIITGGASGIGKVTAKEFIKNGAKVIIADV 385
Query: 320 TD-VGESHA 343
D +G S A
Sbjct: 386 QDELGHSAA 394
>10_01_0138 + 1657028-1657489
Length = 153
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 220 PHVLPGLTRYGRPHCLQLGTELCDVISYWFPQV 122
P V P L ++ R HCL G E DV+ F +V
Sbjct: 77 PEVAPPLGQHARLHCLARGEEGHDVVEDSFREV 109
>01_07_0374 +
43144861-43144998,43145695-43145794,43146499-43146651,
43147383-43150081
Length = 1029
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 55 RESPRSGSGDSGPAQHRAFNGSGLEGTNKRSHRRAP 162
RE SGS ++G A G G +R HRR P
Sbjct: 709 RELLSSGSSEAGAAAAGGGGGGGDSSGGRRGHRRTP 744
>12_01_0304 - 2299676-2299938,2300493-2300841
Length = 203
Score = 27.9 bits (59), Expect = 2.8
Identities = 18/39 (46%), Positives = 18/39 (46%)
Frame = +1
Query: 22 RRPVPEW*GCRRESPRSGSGDSGPAQHRAFNGSGLEGTN 138
RR P W P GS SGP H A GSGL G N
Sbjct: 32 RRDEPLWIAAATAHPSEGSRGSGP--HAA--GSGLPGPN 66
>03_01_0393 -
3062859-3062972,3063027-3063311,3063472-3063759,
3063844-3064161,3064232-3064415,3064504-3064659,
3066394-3066620,3066734-3066804,3067090-3067534
Length = 695
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 370 TRITQPPCHGVTLADVSPFRDDDLAVPI-XGRPQEPL 263
T T PP ++ A++ PF DDD + I G P++ L
Sbjct: 125 TGFTPPPQDTMSSAELHPFSDDDNTMDIEAGTPRKKL 161
>01_06_0209 -
27549615-27550246,27550358-27550452,27553290-27553507,
27553590-27553757
Length = 370
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = -3
Query: 87 GVARTRPWRLSPT--PSPLWNWST 22
G+ T P RL T PS WNWST
Sbjct: 117 GICYTHPERLPGTRQPSGHWNWST 140
>01_01_0243 - 2002383-2002512,2002733-2002884
Length = 93
Score = 27.1 bits (57), Expect = 4.9
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +2
Query: 20 SVDQFQSGEGVGESLQGLVLATPARHSIVPSTDQDLREPIRDHIAELRTELETMRSS 190
+V S GV L A IVP+ + +R ELR L+T RS+
Sbjct: 2 AVTGHSSVAGVNADFAALATKGVAEQRIVPTLSGSVMTAVRSADGELRQRLDTRRSN 58
>06_03_1294 - 29080347-29081447
Length = 366
Score = 26.6 bits (56), Expect = 6.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 66 WRLSPTPSPLWNWSTE 19
WR +P PSP WNW +
Sbjct: 197 WR-TPVPSPGWNWQED 211
>01_06_0787 -
31999632-32000045,32000128-32000214,32000295-32000584,
32000670-32000844,32000930-32001142,32001227-32001328,
32001418-32001822,32001922-32002134,32002312-32002357,
32002602-32002867,32003936-32004012,32004095-32004170,
32004339-32004418,32004945-32005036,32005132-32005171,
32005301-32005400,32005815-32005962,32006071-32006153,
32006207-32006383
Length = 1027
Score = 26.6 bits (56), Expect = 6.5
Identities = 15/52 (28%), Positives = 20/52 (38%)
Frame = +1
Query: 46 GCRRESPRSGSGDSGPAQHRAFNGSGLEGTNKRSHRRAPYRAGDNEVVHNES 201
GCR+ GSG+ G GS + K HR + E + ES
Sbjct: 334 GCRQSQSGGGSGEDGGHDDDDGEGSNKKRRRKNYHRHTAEQIRIMEALFKES 385
>12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747
Length = 180
Score = 26.2 bits (55), Expect = 8.6
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 8 ENRASVDQFQSGEGVGESLQGLVLATPARHSIVPSTDQDLRE 133
E R S D +SG V QG+ A P R + S D D R+
Sbjct: 3 ERRVSEDGGRSGAKVDGDGQGIAAADPGRLAWHGSRDNDKRQ 44
>07_03_0387 - 17536026-17536636,17536772-17537150
Length = 329
Score = 26.2 bits (55), Expect = 8.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 149 IAELRTELETMRSSITSQAREHVRADEVLLTFGAS 253
+AEL +LE +R SQA V + L T G S
Sbjct: 46 LAELSEQLEALRERCDSQALRIVELEHALTTRGRS 80
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 279 RPXIGTARSSSRKGLTSARVTPWHG 353
+P + +++ R GL A VTPW+G
Sbjct: 186 QPVVRGWQAAVRAGLLEANVTPWNG 210
>05_05_0247 + 23593921-23594556
Length = 211
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 70 SGSGDSGPAQHRAFNG 117
SGSGD+ PA+H A +G
Sbjct: 2 SGSGDAAPARHNAGHG 17
>03_05_0505 + 24991699-24991921,24992100-24992665
Length = 262
Score = 26.2 bits (55), Expect = 8.6
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -1
Query: 107 ARCCAGPESPEPDLGDSLLHPHHSGTG 27
ARCCAGP P +LL H G G
Sbjct: 55 ARCCAGPRPPATAHACALLR-HGGGDG 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,243,901
Number of Sequences: 37544
Number of extensions: 206083
Number of successful extensions: 773
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -