Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0064
         (377 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-12|CAA87044.3|  539|Caenorhabditis elegans Hypothetical p...    32   0.16 
U97194-5|AAB52448.1|  442|Caenorhabditis elegans Hypothetical pr...    31   0.21 
U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr...    31   0.21 
U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like pr...    31   0.21 
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr...    31   0.21 
U41558-5|AAK39247.1|  143|Caenorhabditis elegans Hypothetical pr...    28   2.5  
L16622-6|AAA27913.2|  408|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z96102-3|CAE17868.1|  686|Caenorhabditis elegans Hypothetical pr...    26   7.8  
Z81491-16|CAE17747.1|  686|Caenorhabditis elegans Hypothetical p...    26   7.8  
Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical pr...    26   7.8  
Z30215-8|CAA82941.1| 1040|Caenorhabditis elegans Hypothetical pr...    26   7.8  
Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical pr...    26   7.8  
Z29121-3|CAA82389.1| 1040|Caenorhabditis elegans Hypothetical pr...    26   7.8  
U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical pr...    26   7.8  

>Z46934-12|CAA87044.3|  539|Caenorhabditis elegans Hypothetical
           protein ZK1320.6 protein.
          Length = 539

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +2

Query: 95  HSIVPSTDQDLREPIRDHIAELRTELETMRSSITS 199
           H ++    +DLRE +R+H+ EL  + ET+ +++ S
Sbjct: 198 HVLIEKEVEDLREKVREHLGELSKQSETIGNALHS 232


>U97194-5|AAB52448.1|  442|Caenorhabditis elegans Hypothetical
           protein C37A2.3 protein.
          Length = 442

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = +2

Query: 233 LLTFGASALVERFLRP--TXNRNCKVVVAE---GTDVGESHAMARR 355
           L  FG+ AL ERFLRP  T +    + V+E   G+DV   H  ARR
Sbjct: 154 LAQFGSDALRERFLRPSITGDLVSSLAVSEPHAGSDVSAVHTHARR 199


>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like
           protein protein 4,isoform c protein.
          Length = 1576

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 149 IAELRTELETMRSSITSQAREHVRADEV 232
           I ELR E+ET+R  IT   +EH   +E+
Sbjct: 396 IRELREEVETLRMQITQTKKEHAETEEL 423


>U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like
           protein protein 4,isoform b protein.
          Length = 1610

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 149 IAELRTELETMRSSITSQAREHVRADEV 232
           I ELR E+ET+R  IT   +EH   +E+
Sbjct: 396 IRELREEVETLRMQITQTKKEHAETEEL 423


>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like
           protein protein 4,isoform a protein.
          Length = 1595

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 149 IAELRTELETMRSSITSQAREHVRADEV 232
           I ELR E+ET+R  IT   +EH   +E+
Sbjct: 396 IRELREEVETLRMQITQTKKEHAETEEL 423


>U41558-5|AAK39247.1|  143|Caenorhabditis elegans Hypothetical
           protein K02B2.6 protein.
          Length = 143

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 375 ETPELLSRRAMA*LSPTSVPSATTTLQFLXWVGLRNRSTR 256
           +T ++   R    L  +S+P  T+T+ FL  + L+NRS R
Sbjct: 59  KTTQVERTRCANALKSSSMPRGTSTMSFLDPIQLKNRSGR 98


>L16622-6|AAA27913.2|  408|Caenorhabditis elegans Hypothetical
           protein C02D5.1 protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = +2

Query: 233 LLTFGASALVERFLRPTXNRN--CKVVVAE---GTDVGESHAMARR 355
           L  FG+ +L  RFLRP+ N +    + V+E   G+DV      ARR
Sbjct: 120 LAQFGSDSLRNRFLRPSINGDLVSSIAVSEPHAGSDVSAIRTHARR 165


>Z96102-3|CAE17868.1|  686|Caenorhabditis elegans Hypothetical
           protein D1086.9 protein.
          Length = 686

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 55  RESPRSGSGDSGPAQHRAFNGSGLEGTNKRSHR-RAPYRAGDN 180
           R + + G+  +   QHR    +G +GT +     + P RA DN
Sbjct: 260 RAAGQKGTQQADQEQHRGSRSAGQKGTQQLDQESKRPARAADN 302



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 55  RESPRSGSGDSGPAQHRAFNGSGLEGTNKRSHR-RAPYRAGDN 180
           R + + G+  +   QHR    +G +GT +     + P RA DN
Sbjct: 414 RAAGQKGTQQADQEQHRGSRAAGQKGTQQLDQESKRPARAADN 456



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 55  RESPRSGSGDSGPAQHRAFNGSGLEGTNKRSHR-RAPYRAGDN 180
           R + + G+  +   QHR    +G +GT +     + P RA DN
Sbjct: 530 RAAGQKGTQQADQEQHRGSRAAGQKGTQQLDQESKRPARAADN 572


>Z81491-16|CAE17747.1|  686|Caenorhabditis elegans Hypothetical
           protein D1086.9 protein.
          Length = 686

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 55  RESPRSGSGDSGPAQHRAFNGSGLEGTNKRSHR-RAPYRAGDN 180
           R + + G+  +   QHR    +G +GT +     + P RA DN
Sbjct: 260 RAAGQKGTQQADQEQHRGSRSAGQKGTQQLDQESKRPARAADN 302



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 55  RESPRSGSGDSGPAQHRAFNGSGLEGTNKRSHR-RAPYRAGDN 180
           R + + G+  +   QHR    +G +GT +     + P RA DN
Sbjct: 414 RAAGQKGTQQADQEQHRGSRAAGQKGTQQLDQESKRPARAADN 456



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 55  RESPRSGSGDSGPAQHRAFNGSGLEGTNKRSHR-RAPYRAGDN 180
           R + + G+  +   QHR    +G +GT +     + P RA DN
Sbjct: 530 RAAGQKGTQQADQEQHRGSRAAGQKGTQQLDQESKRPARAADN 572


>Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical
           protein ZK757.3b protein.
          Length = 1037

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +1

Query: 55  RESPRSGSGDSGPAQHRAFNGSGLEGTNKRSHRRAP 162
           R +PR   G  GP  +R   G G  G+      R P
Sbjct: 325 RNNPRGPGGPGGPGGYRGGRGGGRGGSYGNFGNRGP 360


>Z30215-8|CAA82941.1| 1040|Caenorhabditis elegans Hypothetical
           protein ZK757.3a protein.
          Length = 1040

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +1

Query: 55  RESPRSGSGDSGPAQHRAFNGSGLEGTNKRSHRRAP 162
           R +PR   G  GP  +R   G G  G+      R P
Sbjct: 328 RNNPRGPGGPGGPGGYRGGRGGGRGGSYGNFGNRGP 363


>Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical
           protein ZK757.3b protein.
          Length = 1037

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +1

Query: 55  RESPRSGSGDSGPAQHRAFNGSGLEGTNKRSHRRAP 162
           R +PR   G  GP  +R   G G  G+      R P
Sbjct: 325 RNNPRGPGGPGGPGGYRGGRGGGRGGSYGNFGNRGP 360


>Z29121-3|CAA82389.1| 1040|Caenorhabditis elegans Hypothetical
           protein ZK757.3a protein.
          Length = 1040

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +1

Query: 55  RESPRSGSGDSGPAQHRAFNGSGLEGTNKRSHRRAP 162
           R +PR   G  GP  +R   G G  G+      R P
Sbjct: 328 RNNPRGPGGPGGPGGYRGGRGGGRGGSYGNFGNRGP 363


>U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical
           protein K09H11.4 protein.
          Length = 630

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = +1

Query: 67  RSGSGDSGPAQHRAFNGSGLEGTN---KRSHRRAPYRAGDNEVVHNE 198
           R   GDSG  + R   G   EG +   +RSH     R G  E  H E
Sbjct: 325 RPARGDSGEVEKRG-RGEKAEGRDEQERRSHGSEERRGGSEEQPHRE 370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,852,521
Number of Sequences: 27780
Number of extensions: 141528
Number of successful extensions: 448
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)