Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0064
         (377 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   0.68 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   1.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   1.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   1.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   2.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   2.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.8  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   6.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   8.4  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.8 bits (49), Expect = 0.68
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 229 LVRPHV--LPGLTRYGRPHCLQLGTELCDVISY 137
           L +PH+  L GL   GRP  LQL ++   +I Y
Sbjct: 310 LYQPHLRGLNGLEFAGRPQNLQLQSQRNQLIQY 342


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 113 TDQDLREPIRDHIAELRTELETMRSSI 193
           +D+DLRE I +    +R + E  RS +
Sbjct: 313 SDEDLREAIDEFKTPMRNDSERNRSPV 339


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 202 LTRYGRPHCLQ 170
           + RYG+PHC +
Sbjct: 588 VVRYGKPHCAE 598


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 202 LTRYGRPHCLQ 170
           + RYG+PHC +
Sbjct: 626 VVRYGKPHCAE 636


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 300 RSSSRKGLTSARVTPWH 350
           RSSS KG+T      WH
Sbjct: 601 RSSSTKGITIQEPPQWH 617


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 32  FQSGEGVGESLQGL 73
           F+ G+G+G+ LQG+
Sbjct: 171 FEPGKGLGKQLQGI 184


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 42  PLWNWSTEALFSSL 1
           P WNWS + +  S+
Sbjct: 838 PYWNWSNQDVIKSI 851


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 131 EPIRDHIAELRTELETMRSSITS 199
           E ++  I  LRT++ +  SSI+S
Sbjct: 358 EKLKQDILNLRTDISSSSSSISS 380


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 68  LGDSLLHPHHSGTGLRKLCFHP 3
           LG  L   H+S TG    CF P
Sbjct: 154 LGVRLPDIHNSVTGKTTACFEP 175


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -2

Query: 352 PCHGVTLADVSPFRDDDLAVPIXGRP 275
           P + +T A   PF    + VP+   P
Sbjct: 211 PAYNMTFAQNGPFNTTTIFVPVKPCP 236


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 266 RFLRPTXNRNCKVVVAEG 319
           R +RP  N N  VVV  G
Sbjct: 34  RLIRPVSNNNDTVVVKLG 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,979
Number of Sequences: 438
Number of extensions: 1806
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)