Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0061
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    32   0.037
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    25   3.2  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   3.2  
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    25   3.2  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    25   5.5  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   5.5  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    25   5.5  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    24   7.3  
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   9.7  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    24   9.7  

>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 31.9 bits (69), Expect = 0.037
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +2

Query: 266 HKLDQGPATSATLTSEDALKLYEQLTILRRIETG*GNLYKEK 391
           +K+D  P+T   +T  + L LYE++  +RR+E     LYK K
Sbjct: 62  YKIDV-PSTEIEVTKGELLGLYEKMVTIRRLELACDALYKAK 102


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 236 ATFEIKPYKLHKLDQGPATSATLTSEDALKLYEQ 337
           A F+IKP  L    Q P  +  L  E ++ LY++
Sbjct: 343 AAFDIKPSTLDTQTQLPENTYVLKEETSMVLYDE 376


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 366 PVSILRNIVSCSYSLRASSEVSVADVA 286
           P+S +    + S SL ASS+VS ADV+
Sbjct: 167 PLSPVSTFPASSISLDASSDVSAADVS 193


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 236 ATFEIKPYKLHKLDQGPATSATLTSEDA 319
           A F++ P+K+  LD   + S  LT +DA
Sbjct: 41  APFDVPPFKVESLDVLISQSEQLTKQDA 68


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 263 LHKLDQGPATSATLTSEDALK 325
           LH L + P  ++TLT+E AL+
Sbjct: 204 LHSLSEPPTPASTLTAEAALE 224


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +3

Query: 204 RQTQNTARKKRRHSKSSPTNS 266
           ++T+N+AR+  RHS+S+ + S
Sbjct: 680 QRTENSARESLRHSRSNMSRS 700


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 164 AGNTITKVTAPVVATNAKYSTKKEATFEIKP 256
           AG  +T V+A  + T AKY+ +    F +KP
Sbjct: 367 AGYYLTFVSAAFIQTVAKYTRRHVRPFFLKP 397


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 228 KKRRHSKSSPTNS 266
           KKR+HSK  P NS
Sbjct: 30  KKRKHSKEKPQNS 42


>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 101

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 204 RQTQNTARKKRRHSKSSPTNSINWIRALQHQPHSLLKM 317
           R+T+N    +RR S+   +  I     ++H+ H + K+
Sbjct: 50  RKTKNPESDRRRQSRKKKSTQIQASDEMKHRRHHVHKV 87


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +2

Query: 92  INLGFIEIIIDKMSKLIPSAAKFLAGNTITKVTAPVVATNAKYSTKK 232
           I++ F + ++D + K+  + A+F   N   K   PVV+   ++ + K
Sbjct: 355 ISIPFQKDMLDTVVKVFSADARFEINNESQKTGEPVVSVVKRFVSDK 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,548,277
Number of Sequences: 5004
Number of extensions: 27420
Number of successful extensions: 78
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)