Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0061
         (392 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47812-8|CAD59156.1|  414|Caenorhabditis elegans Hypothetical pr...    77   6e-15
Z47812-7|CAA87793.1|  397|Caenorhabditis elegans Hypothetical pr...    75   2e-14
AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical ...    31   0.29 
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z71266-7|CAA95845.1|  987|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z69902-11|CAA93766.2|  935|Caenorhabditis elegans Hypothetical p...    28   2.7  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    28   2.7  
AL033535-1|CAB70217.1|  935|Caenorhabditis elegans Hypothetical ...    28   2.7  
AC006712-6|AAO21405.1|  765|Caenorhabditis elegans Temporarily a...    27   4.8  
AC006712-5|AAK39326.2|  851|Caenorhabditis elegans Temporarily a...    27   4.8  
Z77655-4|CAB01135.1|  378|Caenorhabditis elegans Hypothetical pr...    26   8.4  

>Z47812-8|CAD59156.1|  414|Caenorhabditis elegans Hypothetical
           protein T05H10.6b protein.
          Length = 414

 Score = 76.6 bits (180), Expect = 6e-15
 Identities = 38/82 (46%), Positives = 47/82 (57%)
 Frame = +2

Query: 146 SAAKFLAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALK 325
           S A  L    +  +TA  + T        E +F  KP KLHKLD GP TS TL  EDALK
Sbjct: 15  STAMSLFARQLQSLTASGIRTQQVRLASTEVSFHTKPCKLHKLDNGPNTSVTLNREDALK 74

Query: 326 LYEQLTILRRIETG*GNLYKEK 391
            Y  + ++RR+E+  GNLYKEK
Sbjct: 75  YYRDMQVIRRMESAAGNLYKEK 96


>Z47812-7|CAA87793.1|  397|Caenorhabditis elegans Hypothetical
           protein T05H10.6a protein.
          Length = 397

 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 36/77 (46%), Positives = 45/77 (58%)
 Frame = +2

Query: 161 LAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALKLYEQL 340
           L    +  +TA  + T        E +F  KP KLHKLD GP TS TL  EDALK Y  +
Sbjct: 3   LFARQLQSLTASGIRTQQVRLASTEVSFHTKPCKLHKLDNGPNTSVTLNREDALKYYRDM 62

Query: 341 TILRRIETG*GNLYKEK 391
            ++RR+E+  GNLYKEK
Sbjct: 63  QVIRRMESAAGNLYKEK 79


>AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical
           protein Y23H5B.6 protein.
          Length = 732

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +2

Query: 122 DKMSKLIPSAAKFLAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPAT 292
           +K+S +  S  K L    +TKV+A     N K     + TF  +  +L +L++GP+T
Sbjct: 579 EKISNITISKTKPLK-KAVTKVSAAKKILNKKLKVNTKKTFGAEDDELEELEEGPST 634


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 247 FECRLF-FRAVFCVCRYNRCSHFRDCVSG 164
           ++C  + + +V C+  Y RC +  DC  G
Sbjct: 97  WQCDTYTWHSVSCIAEYQRCDNITDCADG 125


>Z71266-7|CAA95845.1|  987|Caenorhabditis elegans Hypothetical
           protein R06C7.8 protein.
          Length = 987

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 175 NHESDCTGCSDKRKIQHEKRGDI 243
           N+ES+ TGC  +R+ +  K+GDI
Sbjct: 624 NNESEITGCKIRRRSEIIKQGDI 646


>Z69902-11|CAA93766.2|  935|Caenorhabditis elegans Hypothetical
           protein C47D12.8 protein.
          Length = 935

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +2

Query: 161 LAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALKLYEQL 340
           +AG T  K      AT AK++   E   EIK   + K D+G  + + L    +  L  Q+
Sbjct: 351 IAGVTNGKADYKKFATPAKWTVLSEILREIKMLPVEKKDRGNDSPSVLVITSSEDLSRQV 410

Query: 341 T 343
           T
Sbjct: 411 T 411


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 247 FECRLF-FRAVFCVCRYNRCSHFRDCVSG 164
           ++C  + + +V C+  Y RC +  DC  G
Sbjct: 97  WQCDTYTWHSVSCIAEYQRCDNITDCADG 125


>AL033535-1|CAB70217.1|  935|Caenorhabditis elegans Hypothetical
           protein C47D12.8 protein.
          Length = 935

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +2

Query: 161 LAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALKLYEQL 340
           +AG T  K      AT AK++   E   EIK   + K D+G  + + L    +  L  Q+
Sbjct: 351 IAGVTNGKADYKKFATPAKWTVLSEILREIKMLPVEKKDRGNDSPSVLVITSSEDLSRQV 410

Query: 341 T 343
           T
Sbjct: 411 T 411


>AC006712-6|AAO21405.1|  765|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 332, isoform b protein.
          Length = 765

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = +2

Query: 125 KMSKLIPSAAKFLAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQ-GPATSAT 301
           + S + P +A       + K +AP     ++   KKE TFE    K   L Q   A S  
Sbjct: 372 RASSVAPQSAPIAPTPKVAKSSAPKEPKESRKEHKKETTFEASGAKSEDLMQINNALSMI 431

Query: 302 LTSEDALK 325
              E+ LK
Sbjct: 432 REREEKLK 439


>AC006712-5|AAK39326.2|  851|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 332, isoform a protein.
          Length = 851

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = +2

Query: 125 KMSKLIPSAAKFLAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQ-GPATSAT 301
           + S + P +A       + K +AP     ++   KKE TFE    K   L Q   A S  
Sbjct: 372 RASSVAPQSAPIAPTPKVAKSSAPKEPKESRKEHKKETTFEASGAKSEDLMQINNALSMI 431

Query: 302 LTSEDALK 325
              E+ LK
Sbjct: 432 REREEKLK 439


>Z77655-4|CAB01135.1|  378|Caenorhabditis elegans Hypothetical
           protein C56A3.5 protein.
          Length = 378

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +2

Query: 107 IEIIIDKMSKLIPSAAKFLAGNTITKVTAPVVATNAKYSTKKEATF--EIKPYKLHKLDQ 280
           +E+  D M KL P+  +   G         V+  N  Y+ ++ + F  ++K   LH  D 
Sbjct: 51  VEVTWDAMFKLRPTLVEVDFGRNPCDELVKVIEKN--YNNEQISHFFEKVKALSLHMTD- 107

Query: 281 GPATSATLTSEDALKLYEQLTIL 349
                  +TSE  LKL ++ T+L
Sbjct: 108 -------ITSESLLKLMDKFTLL 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,641,324
Number of Sequences: 27780
Number of extensions: 157494
Number of successful extensions: 413
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)