Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0058
         (781 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   2.7  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.6  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    22   4.8  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.8  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   4.8  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   4.8  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   8.4  
AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esteras...    21   8.4  
AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.      21   8.4  
AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.      21   8.4  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 358 GYGHFQSFQSQ*RTVVCYK 302
           G+G FQ  Q   +T +C+K
Sbjct: 288 GFGDFQPSQVHKQTAICFK 306


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +3

Query: 207 MRRNATSLKTPPWIWKHTLRHILVLQNFIGSCL*QTTVRHCDWKL*KWPY 356
           ++ N + L  PP I+K T +  +    F          +HCD K   W Y
Sbjct: 110 VKHNGSCLYVPPGIFKSTCKMDITWFPFDD--------QHCDMKFGSWTY 151


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +2

Query: 596 DLGDHYLDCGDLTSALKCYSRARDYCTSG--KHL 691
           D GD ++ CG     LK +   +   TSG  KH+
Sbjct: 394 DTGDKHIQCGRRADVLKFWFMWKAKGTSGLEKHV 427


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +3

Query: 207 MRRNATSLKTPPWIWKHTLRHILVLQNFIGSCL*QTTVRHCDWKL*KWPY 356
           ++ N + L  PP I+K T +  +    F          +HCD K   W Y
Sbjct: 110 VKHNGSCLYVPPGIFKSTCKIDITWFPFDD--------QHCDMKFGSWTY 151


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 156 FISNIIGGF*AFFNENTRNLLSTMKTNS 73
           F  NI+  F   FNE T+ L+  ++  S
Sbjct: 134 FHFNILQEFIQIFNEETKRLVEDLEAES 161


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 668 YCTSGKHLVMMCLNVVKVS 724
           +C   KHLV +  N+VKV+
Sbjct: 226 FCNKIKHLVNLHKNLVKVA 244


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +1

Query: 631  HQCLEMLLKS*RLLHKWKTSCHDVLECS*SFSV 729
            +  ++ + KS  L+HK  T+ H++++    FS+
Sbjct: 930  YSTIQEVSKSGELIHKIATNDHEIIDKIEMFSL 962


>AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esterase
           protein.
          Length = 515

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 71  DELVFIVDSKFRVFSLKKA*NPPIMFEMNTAEPMQV 178
           D+L+ I +    ++ LKK   P +  E  T EP+ +
Sbjct: 255 DKLLQISEKVANIWGLKKVYAPVVDGEFLTDEPIAI 290


>AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.
          Length = 515

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 71  DELVFIVDSKFRVFSLKKA*NPPIMFEMNTAEPMQV 178
           D+L+ I +    ++ LKK   P +  E  T EP+ +
Sbjct: 255 DKLLQISEEVANIWGLKKVYAPVVDGEFLTDEPIAI 290


>AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 71  DELVFIVDSKFRVFSLKKA*NPPIMFEMNTAEPMQV 178
           DE + I +    ++ LKK   P +  E  T EP+ +
Sbjct: 257 DEFLQISEEVANIWGLKKVYAPVVDGEFLTDEPIAI 292


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,855
Number of Sequences: 336
Number of extensions: 3844
Number of successful extensions: 22
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)