Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0058
(781 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 91 2e-19
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch... 31 0.24
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 28 1.3
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 28 1.3
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 28 1.3
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 28 1.7
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 27 3.0
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 27 4.0
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 5.3
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc... 26 7.0
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.2
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 9.2
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 25 9.2
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz... 25 9.2
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb... 25 9.2
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 91.1 bits (216), Expect = 2e-19
Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 1/166 (0%)
Frame = +2
Query: 245 DLETYAASYTGFAKLYRLMFVADHCPSLRLEALKMAISYVMT-TYNVNLYHTLHKKLSEA 421
+L+ Y Y ++K++R +FVA + LR + AI + TYN+ LY +L ++ +
Sbjct: 11 ELKRYLDEYGVWSKIFRALFVARNSKPLRSFCVHYAIKELKEKTYNLELYQSLFEEFQDC 70
Query: 422 VASAGLPDIAGSQDIPVLDTIWVESKTKKAAIKLEKLDTDLKNYKTNSIKESIRRGHDDL 601
+ L D WVES T LE+L +LK YK N I+ESIR DL
Sbjct: 71 FENEQL------------DVEWVESVTFHRKQNLEQLRRELKAYKNNLIRESIRAAQLDL 118
Query: 602 GDHYLDCGDLTSALKCYSRARDYCTSGKHLVMMCLNVVKVSVYLQN 739
+ D G SAL+ Y++ R+YCT+ + + L ++++S+++ N
Sbjct: 119 ASFFADVGQFDSALRSYAKVREYCTNAGQIAHLSLELMRISIWIGN 164
>SPBC2G5.04c |||COPII-coated vesicle component Erv41
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 333
Score = 30.7 bits (66), Expect = 0.24
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Frame = -3
Query: 290 KVLQNQYMTQRMFPNPRWGFQRRSIPSHCF---HYL----LGEYQPALV 165
+++ N+ Q P WG+ R +IP H HY+ GEY PALV
Sbjct: 157 QLVVNRVNGQLHITAPGWGYGRSNIPFHSLNFTHYIEELSFGEYYPALV 205
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 409 FFMQCVIQIYVICGHDIGYGHFQSFQSQ*RTVVCYKHEPIKFCKTSI 269
F +CV++ Y + G F+SF + ++HE I+FCK ++
Sbjct: 140 FLRKCVVE-YEQFSFEQGVQFFKSFLQYRAPSMDFQHEGIEFCKINV 185
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = +2
Query: 131 NPPIMFEMNTAEPMQVDIPPEDNENNET---ECYVVENPTLDLETYAASYTGFAKLYRLM 301
+PP E+ + PP D E NET E ++E P+ D + T A ++
Sbjct: 14 DPPSYEEVALHSALNNSAPPNDGEQNETSMEEMEIIEPPSEDSSRFPLLRTKLAAIHEGW 73
Query: 302 FVADHCPSLR 331
A H +R
Sbjct: 74 ESACHSFEIR 83
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 28.3 bits (60), Expect = 1.3
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Frame = +2
Query: 131 NPPIMFEMNTAEPM---QVDIPPEDNENNET-ECYVVENPTLDLETYA--ASYTGFAKLY 292
+PP MF ++ P+ + P EN ET EC + +P + A G +
Sbjct: 395 SPPTMFRDHSFAPLVSPSIVSPYGVLENEETGECAFLFSPNASQPHFQPRAPTFGIPRNV 454
Query: 293 RLMFVADHCPSLR-LEA-----LKMAISYVMTTYNVNLYHTL 400
R +F ++R +E +++A+ V+TTYNV+L T+
Sbjct: 455 RSLFTLPFFHTIRNIERHFRLFIRLALFCVLTTYNVSLSQTI 496
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 527 KLDTDLKNYKTNSIKESIRRGHDDLGDHYLD 619
K+D+D K +K ++++ IR H D+G D
Sbjct: 122 KVDSDEKKHKHKNVRDYIRFKHVDIGGRIFD 152
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 434 GLPDIAGSQDIPVLDTIWVESKTKKAAIKLEKLDTDLKNYKTNSIKESIRRGHDD 598
G P + D V D ++ K K +K ++ T LKN K ES+ GH+D
Sbjct: 619 GHPFVLQLSDNEVTDASFISEKLK---LKYQQFTT-LKNLKNIDSLESLELGHED 669
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 249 WKHTLRHILVLQNFIGSCL 305
WK TL +LVLQ I CL
Sbjct: 124 WKETLSSLLVLQGNISQCL 142
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 38 NTKRVVKLRFSDELVFIVDSKFRVFSLKK 124
N KR+V+ DEL +VD K F+ KK
Sbjct: 70 NGKRIVQKAVFDELCSLVDPKVDAFTPKK 98
>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 320 DSGLLQT*AYKVLQNQYMTQRMFPNPRWGFQRRSIPSHCFHYLLGEY 180
D LL+T + L +Q +FP P++ R S S + YL+ +
Sbjct: 118 DISLLKTELNEALCSQIRVWSVFPAPKYFNPRISCESRTYEYLIPSF 164
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 536 YLAFPVLWQLFLF-LILPKXXXXXXXXXXXXYQAVLLMPLLLRVF 405
+ +FP+L LF F L + A+L +PLLLRVF
Sbjct: 147 FSSFPILHFLFFFFLCVCVFLSFLFSLSHLLSLAILFLPLLLRVF 191
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 175 LHWFSCVHFEHYWRV 131
+ WFSC HF W+V
Sbjct: 345 MSWFSCNHFYPEWKV 359
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/73 (23%), Positives = 32/73 (43%)
Frame = +2
Query: 476 DTIWVESKTKKAAIKLEKLDTDLKNYKTNSIKESIRRGHDDLGDHYLDCGDLTSALKCYS 655
DT+ + A+ L+T + T S++ S G+ G +++ D + Y
Sbjct: 554 DTVLINRANLMLAVLKNSLNTYIYMTPTTSVQPSQILGNYVTGITFMNKVDYAT----YF 609
Query: 656 RARDYCTSGKHLV 694
A +YC G H++
Sbjct: 610 SAEEYCKQGIHMI 622
>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 265
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/18 (44%), Positives = 16/18 (88%)
Frame = -2
Query: 72 SENRNFTTLLVFFNKYLY 19
+E++N +T L+F+NK++Y
Sbjct: 56 NESQNVSTRLIFWNKWIY 73
>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 194 DNENNETECYVVENPTLDLETYAASY 271
D NN+TE ++ENP ++LET Y
Sbjct: 252 DINNNDTELGLIENP-MNLETPKIDY 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,871
Number of Sequences: 5004
Number of extensions: 63284
Number of successful extensions: 176
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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