Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0058
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0115 - 915142-915321,915397-915631,916301-916386,916474-91... 128 6e-30
01_01_0802 + 6246267-6247541,6247625-6247682,6247806-6248129,624... 32 0.59
11_06_0210 + 21296782-21296909,21297135-21298844,21299127-212994... 29 3.1
05_04_0238 - 19311916-19312299,19312606-19312662 29 3.1
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282... 29 5.5
06_01_0063 - 534138-534605 28 7.2
05_06_0230 + 26585439-26586608 28 7.2
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597... 28 9.6
>03_01_0115 -
915142-915321,915397-915631,916301-916386,916474-916590,
917271-917591,918386-918772
Length = 441
Score = 128 bits (308), Expect = 6e-30
Identities = 67/166 (40%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Frame = +2
Query: 242 LDLETYAASYTGFAKLYRLMFVADHC--PSLRLEALKMAISYVMTTYNVNLYHTLHKKLS 415
LD+E YAA YTG +L RL+F+A+ C ++ LEAL+MA + + + + K++
Sbjct: 34 LDVEAYAAQYTGRTRLARLLFIAERCGVEAVELEALRMAYDEIKRGEDTMFHREVTNKIN 93
Query: 416 EAVASAGLPDIAGSQDIPVLDTIWVESKTKKAAIKLEKLDTDLKNYKTNSIKESIRRGHD 595
+ P A LD W +S ++A + EKL+++L Y+TN IKESIR G++
Sbjct: 94 GRLG----PKYA-------LDQAWTDSVNRRAEQRKEKLESELNGYRTNLIKESIRMGYN 142
Query: 596 DLGDHYLDCGDLTSALKCYSRARDYCTSGKHLVMMCLNVVKVSVYL 733
D+GD + G L+ A K Y R RDYCT+ KH+V MC+NV+ VS+ L
Sbjct: 143 DIGDFFYAHGHLSDAFKSYIRTRDYCTTSKHIVQMCMNVILVSIEL 188
>01_01_0802 +
6246267-6247541,6247625-6247682,6247806-6248129,
6248321-6248355
Length = 563
Score = 31.9 bits (69), Expect = 0.59
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 134 PPIMFEMNTAEPMQVDI-PPEDNENNETECYVVENPTLDLETYAASYTG 277
PP+ ++ EP +DI PP++N ++ E YV + + LE G
Sbjct: 420 PPVQETLHNPEPESIDIEPPKENTADDNERYVGSSSPVHLEDQKGENAG 468
>11_06_0210 +
21296782-21296909,21297135-21298844,21299127-21299418,
21300210-21300519,21300890-21301110
Length = 886
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +2
Query: 572 ESIRRGH--DDLGDHYLDCGDLTSALKCYSRA 661
+ +R+G ++LG Y+DCG L A +CY A
Sbjct: 704 DRLRKGQALNNLGSVYVDCGKLDLAAECYINA 735
>05_04_0238 - 19311916-19312299,19312606-19312662
Length = 146
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 275 QYMTQRMFPNPRWGFQRRSIPSHCFHYLLGEYQPALV--QLCS 153
Q + R+ P PR QR S HCFH+ Y LV Q CS
Sbjct: 54 QVIELRLLPGPRPAMQRFS---HCFHFKWSSYDYFLVLDQRCS 93
>10_08_0838 -
20927020-20927207,20927288-20927491,20927654-20928297,
20928549-20928788,20928884-20928978,20929087-20929434,
20929824-20930042,20930422-20930487,20931191-20931362,
20931456-20931703,20931933-20932073,20932238-20932330,
20932421-20932471,20933571-20933693,20933793-20934035,
20934131-20934211,20935245-20935340,20935535-20936320,
20936443-20937012,20937322-20937427,20938102-20938206,
20938311-20938432,20939321-20939413,20940081-20940104
Length = 1685
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 599 LGDHYLDCGDLTSALKCYSRA 661
LG HY GD A KCY RA
Sbjct: 711 LGHHYALAGDAQRAAKCYQRA 731
>06_01_0063 - 534138-534605
Length = 155
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 230 ENPTLDLETYAASYTGFAKLYRLMFVADHCPSLRLEALKMAI 355
++PT Y SY+ ++ +L+ + DH P+LR +AL ++
Sbjct: 42 DSPTAVDAEYDGSYSYSSQSSQLLELDDHSPALRFDALSSSL 83
>05_06_0230 + 26585439-26586608
Length = 389
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +2
Query: 5 DET***RYLLKNTKRVVKL-RFSDELVFIVDSKFRVFSLKK 124
DET RYL+++ K+++ + R+S + S FRVF +KK
Sbjct: 235 DETVLARYLVESRKKLLMVVRYSSGRQHLPTSAFRVFQMKK 275
>03_02_0663 +
10256898-10258915,10259162-10259248,10259463-10259724,
10259802-10260111,10260535-10260645,10260861-10261090
Length = 1005
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 542 LKNYKTNSIKESIRRG--HDDLGDHYLDCGDLTSALKCYSRA 661
L + + +++R+G ++++G Y+DC L A +CY+ A
Sbjct: 773 LLEHANSCASDNLRKGQAYNNMGSIYVDCDLLDEAAECYNIA 814
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,916,693
Number of Sequences: 37544
Number of extensions: 373942
Number of successful extensions: 855
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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