Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0058
         (781 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051972-1|AAK93396.1|  525|Drosophila melanogaster LD43563p pro...   268   4e-72
AE014296-3080|AAF49212.1|  525|Drosophila melanogaster CG3889-PA...   268   4e-72
AF129080-1|AAD28605.1|  525|Drosophila melanogaster COP9 signalo...   265   5e-71
BT022388-1|AAY54804.1|  364|Drosophila melanogaster IP11532p pro...   121   1e-27
AE014134-2521|AAF53409.1|  364|Drosophila melanogaster CG4697-PA...   121   1e-27
AE014296-1462|AAF50412.1| 2444|Drosophila melanogaster CG6915-PA...    29   9.5  

>AY051972-1|AAK93396.1|  525|Drosophila melanogaster LD43563p
           protein.
          Length = 525

 Score =  268 bits (658), Expect = 4e-72
 Identities = 143/242 (59%), Positives = 167/242 (69%), Gaps = 40/242 (16%)
 Frame = +2

Query: 134 PPIMFEMNTAEPMQVDIPP--EDNENNETECYVVENPTLDLETYAASYTGFAKLYRLMFV 307
           PP+M   N  EPMQVDI P  EDNENNE +  VVENP++DLE YA  Y G  +L+RL++V
Sbjct: 7   PPLM--QNAVEPMQVDIAPPNEDNENNEEQQIVVENPSIDLEVYANQYAGIVRLHRLIYV 64

Query: 308 ADHCPSLRLEALKMAISYVMTTYNVNLYHTLHKKLSE----------------------- 418
           AD CP L +EALKMAI+YV TTYNVNLY  LHK+LS+                       
Sbjct: 65  ADVCPVLAVEALKMAITYVQTTYNVNLYQVLHKRLSDLNAGNAPAPPANAGGDQAGAAAP 124

Query: 419 -AVASAGLPDIAG--------------SQDIPVLDTIWVESKTKKAAIKLEKLDTDLKNY 553
             +A+A LPDIA                +D    D  WV++K KKAA+KLEKLD+DLKNY
Sbjct: 125 GPLAAAPLPDIAAQPVAQAQGQAQPAVEKDAFAYDAAWVDTKMKKAALKLEKLDSDLKNY 184

Query: 554 KTNSIKESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCTSGKHLVMMCLNVVKVSVYL 733
           K+NSIKESIRRGHDDL DHYL CGDLT+ALKCYSRARDYCTSGKH+V MCLNV+KVS+YL
Sbjct: 185 KSNSIKESIRRGHDDLADHYLSCGDLTNALKCYSRARDYCTSGKHVVNMCLNVIKVSIYL 244

Query: 734 QN 739
           QN
Sbjct: 245 QN 246


>AE014296-3080|AAF49212.1|  525|Drosophila melanogaster CG3889-PA
           protein.
          Length = 525

 Score =  268 bits (658), Expect = 4e-72
 Identities = 143/242 (59%), Positives = 167/242 (69%), Gaps = 40/242 (16%)
 Frame = +2

Query: 134 PPIMFEMNTAEPMQVDIPP--EDNENNETECYVVENPTLDLETYAASYTGFAKLYRLMFV 307
           PP+M   N  EPMQVDI P  EDNENNE +  VVENP++DLE YA  Y G  +L+RL++V
Sbjct: 7   PPLM--QNAVEPMQVDIAPPNEDNENNEEQQIVVENPSIDLEVYANQYAGIVRLHRLIYV 64

Query: 308 ADHCPSLRLEALKMAISYVMTTYNVNLYHTLHKKLSE----------------------- 418
           AD CP L +EALKMAI+YV TTYNVNLY  LHK+LS+                       
Sbjct: 65  ADVCPVLAVEALKMAITYVQTTYNVNLYQVLHKRLSDLNAGNAPAPPANAGGDQAGAAAP 124

Query: 419 -AVASAGLPDIAG--------------SQDIPVLDTIWVESKTKKAAIKLEKLDTDLKNY 553
             +A+A LPDIA                +D    D  WV++K KKAA+KLEKLD+DLKNY
Sbjct: 125 GPLAAAPLPDIAAQPVAQAQGQAQPAVEKDAFAYDAAWVDTKMKKAALKLEKLDSDLKNY 184

Query: 554 KTNSIKESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCTSGKHLVMMCLNVVKVSVYL 733
           K+NSIKESIRRGHDDL DHYL CGDLT+ALKCYSRARDYCTSGKH+V MCLNV+KVS+YL
Sbjct: 185 KSNSIKESIRRGHDDLADHYLSCGDLTNALKCYSRARDYCTSGKHVVNMCLNVIKVSIYL 244

Query: 734 QN 739
           QN
Sbjct: 245 QN 246


>AF129080-1|AAD28605.1|  525|Drosophila melanogaster COP9
           signalosome subunit 1 CSN1 protein.
          Length = 525

 Score =  265 bits (649), Expect = 5e-71
 Identities = 141/242 (58%), Positives = 167/242 (69%), Gaps = 40/242 (16%)
 Frame = +2

Query: 134 PPIMFEMNTAEPMQVDIPP--EDNENNETECYVVENPTLDLETYAASYTGFAKLYRLMFV 307
           PP+M   N  EPMQVDI P  EDNENNE +  VVENP++DLE +A  Y G  +L+RL++V
Sbjct: 7   PPLM--QNAVEPMQVDIAPPNEDNENNEEQQIVVENPSIDLEVFANQYAGIVRLHRLIYV 64

Query: 308 ADHCPSLRLEALKMAISYVMTTYNVNLYHTLHKKLSE----------------------- 418
           AD CP L +EALKMAI+YV TTYNVNLY  LHK+LS+                       
Sbjct: 65  ADVCPVLAVEALKMAITYVQTTYNVNLYQVLHKRLSDLNAGNAPAPPANAGGDQAGAAAP 124

Query: 419 -AVASAGLPDIAG--------------SQDIPVLDTIWVESKTKKAAIKLEKLDTDLKNY 553
             +A+A LPDIA                +D    D  WV++K KKAA+KLEKLD+DLKNY
Sbjct: 125 GPLAAAPLPDIAAQPVAQAQGQAQPAVEKDAFAYDAAWVDTKMKKAALKLEKLDSDLKNY 184

Query: 554 KTNSIKESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCTSGKHLVMMCLNVVKVSVYL 733
           K+NSIKESIRRGHDDL DHYL CGDLT+ALKCYSRAR+YCTSGKH+V MCLNV+KVS+YL
Sbjct: 185 KSNSIKESIRRGHDDLADHYLSCGDLTNALKCYSRARNYCTSGKHVVNMCLNVIKVSIYL 244

Query: 734 QN 739
           QN
Sbjct: 245 QN 246


>BT022388-1|AAY54804.1|  364|Drosophila melanogaster IP11532p
           protein.
          Length = 364

 Score =  121 bits (291), Expect = 1e-27
 Identities = 67/188 (35%), Positives = 108/188 (57%), Gaps = 18/188 (9%)
 Frame = +2

Query: 230 ENPTLDLETYAASYTGFAKLYRLMFVADHCPSLRLEALKMAISYVMTTYNVNLYHTLHKK 409
           E   L L +YA  YT   +L RL F+A  CP L + AL++A+++V TTYNV LY  L+K 
Sbjct: 5   EETMLHLPSYADRYTDIPRLIRLKFIAQVCPELSVLALELALNHVKTTYNVKLYDELYKT 64

Query: 410 L---------SEAVASAGLPDIAGSQD---------IPVLDTIWVESKTKKAAIKLEKLD 535
           L         +++  +  L    GS+          +   D+ WVE    +A + L++LD
Sbjct: 65  LCVEVDRKYPNQSKGNEELHTTGGSEPSTSSGRGRVVVPYDSYWVEDNIMEATLMLQELD 124

Query: 536 TDLKNYKTNSIKESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCTSGKHLVMMCLNVV 715
            +L   K+NS    +RR  +++GDH+   G+L  A+K Y+RAR YCTS ++++ M  N++
Sbjct: 125 AELNFKKSNSGSSYVRRILEEIGDHHEKSGNLQMAVKFYARARPYCTSSENVINMFRNLI 184

Query: 716 KVSVYLQN 739
           +VS+Y++N
Sbjct: 185 RVSIYMEN 192


>AE014134-2521|AAF53409.1|  364|Drosophila melanogaster CG4697-PA
           protein.
          Length = 364

 Score =  121 bits (291), Expect = 1e-27
 Identities = 67/188 (35%), Positives = 108/188 (57%), Gaps = 18/188 (9%)
 Frame = +2

Query: 230 ENPTLDLETYAASYTGFAKLYRLMFVADHCPSLRLEALKMAISYVMTTYNVNLYHTLHKK 409
           E   L L +YA  YT   +L RL F+A  CP L + AL++A+++V TTYNV LY  L+K 
Sbjct: 5   EETMLHLPSYADRYTDIPRLIRLKFIAQVCPELSVLALELALNHVKTTYNVKLYDELYKT 64

Query: 410 L---------SEAVASAGLPDIAGSQD---------IPVLDTIWVESKTKKAAIKLEKLD 535
           L         +++  +  L    GS+          +   D+ WVE    +A + L++LD
Sbjct: 65  LCVEVDRKYPNQSKGNEELHTTGGSEPSTSSGRGRVVVPYDSYWVEDNIMEATLMLQELD 124

Query: 536 TDLKNYKTNSIKESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCTSGKHLVMMCLNVV 715
            +L   K+NS    +RR  +++GDH+   G+L  A+K Y+RAR YCTS ++++ M  N++
Sbjct: 125 AELNFKKSNSGSSYVRRILEEIGDHHEKSGNLQMAVKFYARARPYCTSSENVINMFRNLI 184

Query: 716 KVSVYLQN 739
           +VS+Y++N
Sbjct: 185 RVSIYMEN 192


>AE014296-1462|AAF50412.1| 2444|Drosophila melanogaster CG6915-PA
            protein.
          Length = 2444

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 23/83 (27%), Positives = 33/83 (39%)
 Frame = +2

Query: 488  VESKTKKAAIKLEKLDTDLKNYKTNSIKESIRRGHDDLGDHYLDCGDLTSALKCYSRARD 667
            V+ +  + A  LE    DL+     S      R   +LG  +   G    ALKCY R  +
Sbjct: 934  VQQRMGQHAQALELHRQDLEICTELSAPALQARALSNLGSVHESLGQQAEALKCYERQLE 993

Query: 668  YCTSGKHLVMMCLNVVKVSVYLQ 736
              T      M CL + +V   L+
Sbjct: 994  LSTDRLAKAMACLALGRVHHQLE 1016


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,276,409
Number of Sequences: 53049
Number of extensions: 670110
Number of successful extensions: 1898
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1893
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3623012976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)